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  5. Cpa|evm.model.tig00021589.28

Cpa|evm.model.tig00021589.28


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021589.28
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00166450 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.01 Archaeplastida
AT1G26370 No alias RNA helicase family protein 0.01 Archaeplastida
AT2G47250 No alias RNA helicase family protein 0.02 Archaeplastida
AT3G62310 No alias RNA helicase family protein 0.02 Archaeplastida
Cre11.g467654 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Cre24.g755347 No alias RNA processing.RNA splicing.spliceosome... 0.01 Archaeplastida
GSVIVT01007911001 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.01 Archaeplastida
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Gb_13411 No alias RNA helicase (Prp16) 0.03 Archaeplastida
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
LOC_Os06g09280.1 No alias RNA helicase (Prp22) 0.01 Archaeplastida
LOC_Os07g32430.1 No alias RNA helicase (Prp16) 0.03 Archaeplastida
LOC_Os11g20554.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Mp1g21130.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.01 Archaeplastida
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Mp4g16380.1 No alias RNA helicase (Prp2) 0.01 Archaeplastida
Mp4g18940.1 No alias RNA helicase (Prp22) 0.01 Archaeplastida
Pp3c23_5290V3.1 No alias RNA helicase family protein 0.01 Archaeplastida
Smo429199 No alias Solute transport.carrier-mediated transport.MFS... 0.03 Archaeplastida
Smo82212 No alias RNA processing.RNA splicing.spliceosome... 0.01 Archaeplastida
Solyc01g110990.2.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc04g014210.3.1 No alias E3 ubiquitin ligase (RBR-Helicase) 0.01 Archaeplastida
Solyc09g097820.3.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Zm00001e001487_P003 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.01 Archaeplastida
Zm00001e014112_P001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Zm00001e038305_P001 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 1 54
IPR011709 DUF1605 135 171
No external refs found!