AT2G13960

Description : Homeodomain-like superfamily protein

Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000288 (LandPlants) Phylogenetic Tree(s): OG_05_0000288_tree ,
OG_06_0003085 (SeedPlants) Phylogenetic Tree(s): OG_06_0003085_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G13960
Cluster	HCCA: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00219710	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
AMTR_s00010p00261750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00079p00140660	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
AT5G10280	ATMYB64, ATMYB92, MYB92	myb domain protein 92	0.04	Archaeplastida
GSVIVT01000219001	No alias	No description available	0.04	Archaeplastida
GSVIVT01016768001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
GSVIVT01020038001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01026481001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01029145001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.05	Archaeplastida
Gb_00379	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os01g03720.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os01g51260.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os04g38740.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os05g48010.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os06g43090.1	No alias	transcription factor (MYB)	0.05	Archaeplastida
LOC_Os07g43580.1	No alias	transcription factor (MYB)	0.05	Archaeplastida
LOC_Os09g24800.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os11g45740.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os12g07640.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os12g37690.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_10427849g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_1201g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
Mp5g14610.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Pp3c17_7730V3.1	No alias	myb domain protein 55	0.02	Archaeplastida
Pp3c1_4970V3.1	No alias	myb domain protein 106	0.02	Archaeplastida
Pp3c4_13790V3.1	No alias	myb domain protein 105	0.03	Archaeplastida
Smo99462	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.1	Archaeplastida
Solyc01g111500.3.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Solyc02g067760.4.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Solyc04g078420.1.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc04g079360.1.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc05g055030.2.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc09g090130.3.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Solyc11g069030.3.1	No alias	transcription factor (MYB)	0.06	Archaeplastida
Zm00001e001404_P001	No alias	transcription factor (MYB)	0.06	Archaeplastida
Zm00001e001409_P001	No alias	transcription factor (MYB)	0.06	Archaeplastida
Zm00001e004568_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e015235_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e019501_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e020004_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e021349_P001	No alias	transcription factor (MYB)	0.05	Archaeplastida
Zm00001e030480_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Neighborhood
MF	GO:0004620	phospholipase activity	IEP	Neighborhood
MF	GO:0004657	proline dehydrogenase activity	IEP	Neighborhood
BP	GO:0006536	glutamate metabolic process	IEP	Neighborhood
BP	GO:0006537	glutamate biosynthetic process	IEP	Neighborhood
BP	GO:0006560	proline metabolic process	IEP	Neighborhood
BP	GO:0006562	proline catabolic process	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009065	glutamine family amino acid catabolic process	IEP	Neighborhood
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009838	abscission	IEP	Neighborhood
BP	GO:0009954	proximal/distal pattern formation	IEP	Neighborhood
BP	GO:0010016	shoot system morphogenesis	IEP	Neighborhood
BP	GO:0010029	regulation of seed germination	IEP	Neighborhood
BP	GO:0010227	floral organ abscission	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
MF	GO:0016289	CoA hydrolase activity	IEP	Neighborhood
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Neighborhood
MF	GO:0016790	thiolester hydrolase activity	IEP	Neighborhood
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0045036	protein targeting to chloroplast	IEP	Neighborhood
BP	GO:0045037	protein import into chloroplast stroma	IEP	Neighborhood
MF	GO:0047617	acyl-CoA hydrolase activity	IEP	Neighborhood
BP	GO:0048439	flower morphogenesis	IEP	Neighborhood
MF	GO:0050897	cobalt ion binding	IEP	Neighborhood
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Neighborhood
BP	GO:0072598	protein localization to chloroplast	IEP	Neighborhood
BP	GO:1900140	regulation of seedling development	IEP	Neighborhood
BP	GO:1900864	mitochondrial RNA modification	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	75	121

External Links

No external refs found!

AT2G13960

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation