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  5. Cpa|evm.model.tig00021721.26

Cpa|evm.model.tig00021721.26


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP12 assembly factor


Gene families : OG0003961 (Archaeplastida) Phylogenetic Tree(s): OG0003961_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021721.26
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AT3G21540 No alias transducin family protein / WD-40 repeat family protein 0.08 Archaeplastida
Cre10.g438700 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
GSVIVT01033690001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Gb_01026 No alias no hits & (original description: none) 0.01 Archaeplastida
LOC_Os03g05720.1 No alias SSU processome assembly factor (UTP12) 0.08 Archaeplastida
MA_10436238g0010 No alias SSU processome assembly factor (UTP12) 0.03 Archaeplastida
MA_6918360g0010 No alias SSU processome assembly factor (UTP12) 0.02 Archaeplastida
Mp2g05570.1 No alias SSU processome assembly factor (UTP12) 0.12 Archaeplastida
Pp3c24_9070V3.1 No alias transducin family protein / WD-40 repeat family protein 0.02 Archaeplastida
Smo99969 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
Solyc10g039190.2.1 No alias SSU processome assembly factor (UTP12) 0.09 Archaeplastida
Zm00001e000415_P001 No alias SSU processome assembly factor (UTP12) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 585 616
IPR001680 WD40_repeat 50 88
IPR001680 WD40_repeat 177 213
IPR001680 WD40_repeat 137 172
IPR001680 WD40_repeat 649 685
IPR001680 WD40_repeat 488 520
IPR001680 WD40_repeat 96 130
IPR001680 WD40_repeat 409 438
IPR007148 SSU_processome_Utp12 760 860
No external refs found!