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  5. Cpa|evm.model.tig00022075.25

Cpa|evm.model.tig00022075.25


Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp43 RNA helicase


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00022075.25
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00154740 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.04 Archaeplastida
AMTR_s00021p00166450 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
AMTR_s00022p00074370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.04 Archaeplastida
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
Cre08.g358563 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
GSVIVT01021163001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Gb_11931 No alias RNA helicase (Prp22) 0.03 Archaeplastida
Gb_13411 No alias RNA helicase (Prp16) 0.01 Archaeplastida
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
LOC_Os06g09280.1 No alias RNA helicase (Prp22) 0.01 Archaeplastida
LOC_Os11g20554.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Mp1g21130.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
Pp3c15_1470V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Pp3c1_18490V3.1 No alias RNA helicase family protein 0.01 Archaeplastida
Pp3c23_12820V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Pp3c23_5290V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c24_70V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Solyc05g015040.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Solyc07g039550.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Solyc09g097820.3.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Solyc10g076910.2.1 No alias RNA helicase (Prp16) 0.01 Archaeplastida
Zm00001e001487_P003 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
Zm00001e016478_P002 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Zm00001e028404_P001 No alias RNA helicase (Prp22) 0.02 Archaeplastida
Zm00001e038305_P001 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 452 540
IPR001650 Helicase_C 251 389
IPR011545 DEAD/DEAH_box_helicase_dom 61 209
IPR011709 DUF1605 602 678
No external refs found!