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  5. Cpa|evm.model.tig00022080.18

Cpa|evm.model.tig00022080.18


Description : Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana


Gene families : OG0003758 (Archaeplastida) Phylogenetic Tree(s): OG0003758_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00022080.18
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00123630 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.02 Archaeplastida
AT2G39260 No alias binding;RNA binding 0.02 Archaeplastida
Cre17.g729250 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
GSVIVT01016353001 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
Gb_41555 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 Archaeplastida
LOC_Os02g42040.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 Archaeplastida
MA_10433453g0010 No alias Regulator of nonsense transcripts UPF2 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c11_19990V3.1 No alias binding;RNA binding 0.02 Archaeplastida
Smo440923 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 Archaeplastida
Solyc04g049770.4.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!