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  5. Gb_01340

Gb_01340


Description : regulatory component RPT5 of 26S proteasome


Gene families : OG0003943 (Archaeplastida) Phylogenetic Tree(s): OG0003943_tree ,
OG_05_0003993 (LandPlants) Phylogenetic Tree(s): OG_05_0003993_tree ,
OG_06_0004428 (SeedPlants) Phylogenetic Tree(s): OG_06_0004428_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_01340
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00104360 evm_27.TU.AmTr_v1... Protein degradation.26S proteasome.regulatory... 0.03 Archaeplastida
Cpa|evm.model.tig00001187.20 No alias 26S proteasome regulatory subunit 6A homolog OS=Oryza... 0.02 Archaeplastida
Cre10.g439150 No alias Protein degradation.26S proteasome.regulatory... 0.02 Archaeplastida
LOC_Os02g56000.1 No alias regulatory component RPT5 of 26S proteasome 0.03 Archaeplastida
LOC_Os06g07630.1 No alias regulatory component RPT5 of 26S proteasome 0.03 Archaeplastida
Mp3g09490.1 No alias regulatory component RPT5 of 26S proteasome 0.04 Archaeplastida
Pp3c5_21920V3.1 No alias regulatory particle triple-A ATPase 5A 0.03 Archaeplastida
Smo74992 No alias Protein degradation.26S proteasome.regulatory... 0.03 Archaeplastida
Solyc01g099760.3.1 No alias regulatory component RPT5 of 26S proteasome 0.03 Archaeplastida
Zm00001e016153_P002 No alias regulatory component RPT5 of 26S proteasome 0.03 Archaeplastida
Zm00001e031055_P001 No alias regulatory component RPT5 of 26S proteasome 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP Neighborhood
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005049 nuclear export signal receptor activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032501 Prot_ATP_ID_OB 74 150
IPR003959 ATPase_AAA_core 208 340
No external refs found!