1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_01460

Gb_01460


Description : pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0004417 (SeedPlants) Phylogenetic Tree(s): OG_06_0004417_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_01460
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00264370 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AT1G05310 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G11370 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G19150 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT2G36710 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT5G26810 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01013827001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01013838001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01014641001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01023786001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_39595 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os05g44600.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os09g39760.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os11g45720.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os11g45730.1 No alias pectin methylesterase 0.02 Archaeplastida
MA_10267810g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_181657g0020 No alias pectin methylesterase 0.02 Archaeplastida
MA_304854g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_6149868g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.06 Archaeplastida
MA_87592g0010 No alias pectin methylesterase 0.03 Archaeplastida
Mp1g17560.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp2g01420.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp3g01170.1 No alias pectin methylesterase 0.04 Archaeplastida
Mp4g01190.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp5g03920.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp5g03930.1 No alias pectin methylesterase 0.03 Archaeplastida
Pp3c10_18650V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c10_19460V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c10_20120V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c12_23790V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c16_19430V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c25_3840V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_24830V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_30560V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c3_35040V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c5_12820V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c8_1680V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo165098 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Solyc01g079180.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc05g053680.1.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc07g043240.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc08g078640.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc10g083820.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc12g099230.2.1 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e002891_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e004804_P001 No alias pectin methylesterase 0.01 Archaeplastida
Zm00001e020795_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e027944_P002 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e033546_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e035522_P001 No alias pectin methylesterase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005384 manganese ion transmembrane transporter activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006873 cellular ion homeostasis IEP Neighborhood
BP GO:0006875 cellular metal ion homeostasis IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Neighborhood
BP GO:0009245 lipid A biosynthetic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
MF GO:0019213 deacetylase activity IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0030003 cellular cation homeostasis IEP Neighborhood
BP GO:0030026 cellular manganese ion homeostasis IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046493 lipid A metabolic process IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0046916 cellular transition metal ion homeostasis IEP Neighborhood
BP GO:0048878 chemical homeostasis IEP Neighborhood
BP GO:0050801 ion homeostasis IEP Neighborhood
BP GO:0055065 metal ion homeostasis IEP Neighborhood
BP GO:0055071 manganese ion homeostasis IEP Neighborhood
BP GO:0055076 transition metal ion homeostasis IEP Neighborhood
BP GO:0055080 cation homeostasis IEP Neighborhood
BP GO:0055082 cellular chemical homeostasis IEP Neighborhood
BP GO:0098771 inorganic ion homeostasis IEP Neighborhood
BP GO:1901269 lipooligosaccharide metabolic process IEP Neighborhood
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 56 347
No external refs found!