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  5. Gb_01504

Gb_01504


Description : alpha-class expansin


Gene families : OG0000024 (Archaeplastida) Phylogenetic Tree(s): OG0000024_tree ,
OG_05_0000028 (LandPlants) Phylogenetic Tree(s): OG_05_0000028_tree ,
OG_06_0000041 (SeedPlants) Phylogenetic Tree(s): OG_06_0000041_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_01504
Cluster HCCA: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00264980 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.06 Archaeplastida
AMTR_s00077p00060330 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AT1G20190 ATEXPA11, ATHEXP... expansin 11 0.03 Archaeplastida
AT1G69530 ATEXPA1, EXP1,... expansin A1 0.04 Archaeplastida
AT2G40610 EXPA8, ATHEXP... expansin A8 0.02 Archaeplastida
AT5G56320 ATEXP14, EXPA14,... expansin A14 0.03 Archaeplastida
GSVIVT01008762001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01019965001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01028215001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Gb_00025 No alias alpha-class expansin 0.04 Archaeplastida
Gb_01499 No alias alpha-class expansin 0.04 Archaeplastida
Gb_01500 No alias alpha-class expansin 0.04 Archaeplastida
Gb_01502 No alias alpha-class expansin 0.05 Archaeplastida
Gb_01506 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_28036 No alias Expansin-A29 OS=Oryza sativa subsp. japonica... 0.08 Archaeplastida
LOC_Os02g16730.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os03g06060.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os03g21820.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os03g25990.1 No alias alpha-class expansin 0.04 Archaeplastida
MA_10020g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_100868g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_10377235g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_10425823g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_12056g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_200461g0010 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_474624g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_7218g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_915221g0010 No alias alpha-class expansin 0.02 Archaeplastida
Mp1g24230.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g09770.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g24470.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp4g22180.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp5g20420.1 No alias alpha-class expansin 0.02 Archaeplastida
Pp3c13_20360V3.1 No alias expansin A9 0.03 Archaeplastida
Pp3c18_19660V3.1 No alias expansin A9 0.02 Archaeplastida
Pp3c18_19720V3.1 No alias expansin A1 0.04 Archaeplastida
Pp3c24_15400V3.1 No alias expansin A15 0.02 Archaeplastida
Pp3c8_13450V3.1 No alias expansin A1 0.02 Archaeplastida
Pp3c8_13470V3.1 No alias expansin A1 0.02 Archaeplastida
Solyc05g052250.3.1 No alias alpha-class expansin 0.02 Archaeplastida
Solyc06g051800.3.1 No alias alpha-class expansin 0.04 Archaeplastida
Solyc07g063210.3.1 No alias alpha-class expansin 0.04 Archaeplastida
Solyc08g007780.3.1 No alias Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Solyc08g080060.4.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc10g084780.3.1 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e004714_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e004720_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e014231_P001 No alias Expansin-A13 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e017221_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e038997_P001 No alias alpha-class expansin 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 163 240
IPR009009 RlpA-like_DPBB 67 151
No external refs found!