AT2G17580

Description : Polynucleotide adenylyltransferase family protein

Gene families : OG0002806 (Archaeplastida) Phylogenetic Tree(s): OG0002806_tree ,
OG_05_0003454 (LandPlants) Phylogenetic Tree(s): OG_05_0003454_tree ,
OG_06_0002415 (SeedPlants) Phylogenetic Tree(s): OG_06_0002415_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G17580
Cluster	HCCA: Cluster_233

Target	Alias	Description	ECC score	Gene Family Method	Actions
Solyc02g082810.3.1	No alias	no hits & (original description: none)	0.06	Archaeplastida
Solyc03g032180.3.1	No alias	no hits & (original description: none)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Neighborhood
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0000213	tRNA-intron endonuclease activity	IEP	Neighborhood
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003727	single-stranded RNA binding	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	Neighborhood
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
MF	GO:0004814	arginine-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006338	chromatin remodeling	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Neighborhood
BP	GO:0006420	arginyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006595	polyamine metabolic process	IEP	Neighborhood
BP	GO:0006596	polyamine biosynthetic process	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
BP	GO:0006935	chemotaxis	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0007059	chromosome segregation	IEP	Neighborhood
BP	GO:0007062	sister chromatid cohesion	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
BP	GO:0008216	spermidine metabolic process	IEP	Neighborhood
MF	GO:0008266	poly(U) RNA binding	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
BP	GO:0008295	spermidine biosynthetic process	IEP	Neighborhood
MF	GO:0008469	histone-arginine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009309	amine biosynthetic process	IEP	Neighborhood
BP	GO:0009553	embryo sac development	IEP	Neighborhood
BP	GO:0009846	pollen germination	IEP	Neighborhood
BP	GO:0009875	pollen-pistil interaction	IEP	Neighborhood
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0009909	regulation of flower development	IEP	Neighborhood
BP	GO:0010074	maintenance of meristem identity	IEP	Neighborhood
BP	GO:0010183	pollen tube guidance	IEP	Neighborhood
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	Neighborhood
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	Neighborhood
BP	GO:0010311	lateral root formation	IEP	Neighborhood
CC	GO:0010445	nuclear dicing body	IEP	Neighborhood
BP	GO:0010449	root meristem growth	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
MF	GO:0016273	arginine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016274	protein-arginine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016277	[myelin basic protein]-arginine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
CC	GO:0016514	SWI/SNF complex	IEP	Neighborhood
BP	GO:0016567	protein ubiquitination	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
CC	GO:0016604	nuclear body	IEP	Neighborhood
CC	GO:0016607	nuclear speck	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0018195	peptidyl-arginine modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0018216	peptidyl-arginine methylation	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0019919	peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
BP	GO:0031053	primary miRNA processing	IEP	Neighborhood
BP	GO:0032204	regulation of telomere maintenance	IEP	Neighborhood
BP	GO:0032446	protein modification by small protein conjugation	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
BP	GO:0034969	histone arginine methylation	IEP	Neighborhood
BP	GO:0034970	histone H3-R2 methylation	IEP	Neighborhood
BP	GO:0034971	histone H3-R17 methylation	IEP	Neighborhood
BP	GO:0034972	histone H3-R26 methylation	IEP	Neighborhood
MF	GO:0035241	protein-arginine omega-N monomethyltransferase activity	IEP	Neighborhood
MF	GO:0035242	protein-arginine omega-N asymmetric methyltransferase activity	IEP	Neighborhood
BP	GO:0035246	peptidyl-arginine N-methylation	IEP	Neighborhood
BP	GO:0035247	peptidyl-arginine omega-N-methylation	IEP	Neighborhood
BP	GO:0035266	meristem growth	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0040011	locomotion	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
BP	GO:0042330	taxis	IEP	Neighborhood
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
MF	GO:0042803	protein homodimerization activity	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
MF	GO:0043138	3'-5' DNA helicase activity	IEP	Neighborhood
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044448	cell cortex part	IEP	Neighborhood
CC	GO:0044454	nuclear chromosome part	IEP	Neighborhood
BP	GO:0045132	meiotic chromosome segregation	IEP	Neighborhood
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Neighborhood
MF	GO:0046982	protein heterodimerization activity	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0048229	gametophyte development	IEP	Neighborhood
BP	GO:0048507	meristem development	IEP	Neighborhood
BP	GO:0048513	animal organ development	IEP	Neighborhood
BP	GO:0048569	post-embryonic animal organ development	IEP	Neighborhood
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Neighborhood
BP	GO:0048831	regulation of shoot system development	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
BP	GO:0050918	positive chemotaxis	IEP	Neighborhood
BP	GO:0051052	regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
BP	GO:0051239	regulation of multicellular organismal process	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Neighborhood
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Neighborhood
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0097164	ammonium ion metabolic process	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:0098813	nuclear chromosome segregation	IEP	Neighborhood
CC	GO:0099023	tethering complex	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1903046	meiotic cell cycle process	IEP	Neighborhood
CC	GO:1904949	ATPase complex	IEP	Neighborhood
BP	GO:1905393	plant organ formation	IEP	Neighborhood
BP	GO:2000011	regulation of adaxial/abaxial pattern formation	IEP	Neighborhood
BP	GO:2000012	regulation of auxin polar transport	IEP	Neighborhood
BP	GO:2000026	regulation of multicellular organismal development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002646	PolA_pol_head_dom	92	237
IPR032828	PolyA_RNA-bd	264	326

External Links

No external refs found!

AT2G17580

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation