Gb_02468

Description : subfamily ABCB transporter

Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0000720 (LandPlants) Phylogenetic Tree(s): OG_05_0000720_tree ,
OG_06_0000544 (SeedPlants) Phylogenetic Tree(s): OG_06_0000544_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_02468
Cluster	HCCA: Cluster_53

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00263610	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AMTR_s00045p00108620	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00045p00109940	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AT1G02520	PGP11	P-glycoprotein 11	0.04	Archaeplastida
AT1G27940	PGP13	P-glycoprotein 13	0.03	Archaeplastida
AT3G28345	No alias	ABC transporter family protein	0.03	Archaeplastida
AT3G28415	No alias	ABC transporter family protein	0.03	Archaeplastida
AT3G62150	PGP21	P-glycoprotein 21	0.05	Archaeplastida
AT4G01820	PGP3, MDR3	P-glycoprotein 3	0.02	Archaeplastida
AT4G01830	PGP5	P-glycoprotein 5	0.02	Archaeplastida
AT4G18050	PGP9	P-glycoprotein 9	0.04	Archaeplastida
AT4G25960	PGP2	P-glycoprotein 2	0.03	Archaeplastida
GSVIVT01028256001	No alias	Solute transport.primary active transport.ABC...	0.08	Archaeplastida
GSVIVT01032578001	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Gb_07563	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Gb_32125	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Gb_33057	No alias	subfamily ABCB transporter	0.06	Archaeplastida
Gb_33058	No alias	subfamily ABCB transporter	0.05	Archaeplastida
LOC_Os01g18670.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
LOC_Os01g50080.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
LOC_Os01g50100.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
LOC_Os01g50160.1	No alias	subfamily ABCB transporter	0.06	Archaeplastida
LOC_Os02g09720.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
LOC_Os02g21750.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_10432922g0010	No alias	subfamily ABCB transporter	0.07	Archaeplastida
MA_10436810g0020	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_107576g0010	No alias	subfamily ABCB transporter	0.04	Archaeplastida
MA_111099g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_6870g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_79399g0010	No alias	Putative multidrug resistance protein OS=Oryza sativa...	0.03	Archaeplastida
MA_83806g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_93218g0020	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_934204g0010	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Mp1g26440.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Mp2g11920.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Mp3g11830.1	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.02	Archaeplastida
Mp7g04390.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Pp3c1_31680V3.1	No alias	ABC transporter family protein	0.01	Archaeplastida
Pp3c1_7215V3.1	No alias	ATP binding cassette subfamily B19	0.02	Archaeplastida
Smo410515	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo92485	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo99885	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Solyc03g005860.4.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Solyc03g093650.3.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Solyc05g013890.3.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Solyc06g009280.1.1	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Solyc06g009290.4.1	No alias	subfamily ABCB transporter	0.08	Archaeplastida
Solyc08g076720.4.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Solyc11g067300.2.1	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Solyc11g067310.3.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Solyc12g098840.3.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Zm00001e020070_P001	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Zm00001e025063_P001	No alias	subfamily ABCB transporter	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	IEP	Neighborhood
BP	GO:0002831	regulation of response to biotic stimulus	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004420	hydroxymethylglutaryl-CoA reductase (NADPH) activity	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
MF	GO:0008061	chitin binding	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010112	regulation of systemic acquired resistance	IEP	Neighborhood
MF	GO:0010181	FMN binding	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0031347	regulation of defense response	IEP	Neighborhood
BP	GO:0032101	regulation of response to external stimulus	IEP	Neighborhood
BP	GO:0043900	regulation of multi-organism process	IEP	Neighborhood
BP	GO:0045088	regulation of innate immune response	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0048583	regulation of response to stimulus	IEP	Neighborhood
BP	GO:0050776	regulation of immune response	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:0080134	regulation of response to stress	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	880	945
IPR011527	ABC1_TM_dom	2	137
IPR011527	ABC1_TM_dom	513	766
IPR003439	ABC_transporter-like	216	364

External Links

No external refs found!

Gb_02468

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation