1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_03548

Gb_03548


Description : Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana (sp|q9ltv8|pp224_arath : 538.0)


Gene families : OG0016307 (Archaeplastida) Phylogenetic Tree(s): OG0016307_tree ,
OG_05_0015855 (LandPlants) Phylogenetic Tree(s): OG_05_0015855_tree ,
OG_06_0015620 (SeedPlants) Phylogenetic Tree(s): OG_06_0015620_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_03548
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
MA_109221g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0035596 methylthiotransferase activity IEP Neighborhood
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 320 366
IPR002885 Pentatricopeptide_repeat 420 464
IPR002885 Pentatricopeptide_repeat 521 568
IPR002885 Pentatricopeptide_repeat 218 266
IPR002885 Pentatricopeptide_repeat 597 620
IPR032867 DYW_dom 696 816
No external refs found!