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Gb_03741


Description : component SF3A1 of splicing factor 3A complex


Gene families : OG0003158 (Archaeplastida) Phylogenetic Tree(s): OG0003158_tree ,
OG_05_0003043 (LandPlants) Phylogenetic Tree(s): OG_05_0003043_tree ,
OG_06_0004939 (SeedPlants) Phylogenetic Tree(s): OG_06_0004939_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_03741
Cluster HCCA: Cluster_324

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00096200 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
AT1G14650 No alias SWAP (Suppressor-of-White-APricot)/surp... 0.06 Archaeplastida
Cre06.g307450 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 Archaeplastida
GSVIVT01012058001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
LOC_Os02g14780.2 No alias component SF3A1 of splicing factor 3A complex 0.06 Archaeplastida
MA_10432431g0010 No alias component SF3A1 of splicing factor 3A complex 0.05 Archaeplastida
Mp6g07670.1 No alias component SF3A1 of splicing factor 3A complex 0.03 Archaeplastida
Pp3c23_15260V3.1 No alias SWAP (Suppressor-of-White-APricot)/surp... 0.02 Archaeplastida
Smo146605 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Solyc02g081960.3.1 No alias component SF3A1 of splicing factor 3A complex 0.1 Archaeplastida
Solyc04g005690.4.1 No alias component SF3A1 of splicing factor 3A complex 0.06 Archaeplastida
Zm00001e017307_P001 No alias component SF3A1 of splicing factor 3A complex 0.07 Archaeplastida
Zm00001e025538_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
InterPro domains Description Start Stop
IPR022030 SF3A1 265 482
IPR000061 Surp 71 122
IPR000061 Surp 193 244
IPR000626 Ubiquitin_dom 755 811
No external refs found!