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  5. Gb_04007

Gb_04007


Description : ATPase component Ino80 of chromatin remodelling complex


Gene families : OG0006593 (Archaeplastida) Phylogenetic Tree(s): OG0006593_tree ,
OG_05_0006306 (LandPlants) Phylogenetic Tree(s): OG_05_0006306_tree ,
OG_06_0008936 (SeedPlants) Phylogenetic Tree(s): OG_06_0008936_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04007
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00190690 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
Cpa|evm.model.tig00021501.9 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01033231001 No alias Chromatin organisation.chromatin remodeling... 0.11 Archaeplastida
LOC_Os03g22900.1 No alias ATPase component Ino80 of chromatin remodelling complex 0.05 Archaeplastida
MA_3312g0010 No alias ATPase component Ino80 of chromatin remodelling complex 0.05 Archaeplastida
Mp8g00130.1 No alias ATPase component Ino80 of chromatin remodelling complex 0.03 Archaeplastida
Pp3c1_3340V3.1 No alias INO80 ortholog 0.03 Archaeplastida
Pp3c2_32500V3.1 No alias INO80 ortholog 0.02 Archaeplastida
Pp3c2_32501V3.1 No alias INO80 ortholog 0.03 Archaeplastida
Smo444050 No alias Chromatin organisation.chromatin remodeling... 0.08 Archaeplastida
Solyc04g016370.3.1 No alias ATPase component Ino80 of chromatin remodelling complex 0.06 Archaeplastida
Zm00001e001678_P001 No alias ATPase component Ino80 of chromatin remodelling complex 0.07 Archaeplastida
Zm00001e038194_P002 No alias ATPase component Ino80 of chromatin remodelling complex 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR020838 DBINO 390 520
IPR001650 Helicase_C 1254 1366
IPR000330 SNF2_N 636 934
No external refs found!