1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_04218

Gb_04218


Description : Transcriptional corepressor SEUSS OS=Arabidopsis thaliana (sp|q8w234|seuss_arath : 284.0)


Gene families : OG0001132 (Archaeplastida) Phylogenetic Tree(s): OG0001132_tree ,
OG_05_0001403 (LandPlants) Phylogenetic Tree(s): OG_05_0001403_tree ,
OG_06_0001294 (SeedPlants) Phylogenetic Tree(s): OG_06_0001294_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04218
Cluster HCCA: Cluster_324

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00119460 evm_27.TU.AmTr_v1... Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00071p00041100 evm_27.TU.AmTr_v1... Transcriptional corepressor SEUSS OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G43850 SEU SEUSS transcriptional co-regulator 0.06 Archaeplastida
AT4G25515 SLK3 SEUSS-like 3 0.04 Archaeplastida
GSVIVT01010013001 No alias Transcriptional corepressor SEUSS OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01010616001 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os11g10060.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os11g10070.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.04 Archaeplastida
MA_12796g0010 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.04 Archaeplastida
MA_208023g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp1g03270.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.02 Archaeplastida
Mp8g17020.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.02 Archaeplastida
Pp3c16_15040V3.1 No alias SEUSS transcriptional co-regulator 0.03 Archaeplastida
Pp3c25_7810V3.1 No alias SEUSS transcriptional co-regulator 0.03 Archaeplastida
Pp3c6_27010V3.1 No alias SEUSS transcriptional co-regulator 0.03 Archaeplastida
Solyc03g026190.3.1 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.08 Archaeplastida
Solyc06g059750.3.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.11 Archaeplastida
Solyc06g059760.3.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.1 Archaeplastida
Zm00001e029868_P001 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e039584_P001 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR029005 LIM-bd/SEUSS 386 528
No external refs found!