Gb_04608

Description : component RPS2 of SSU proteome

Gene families : OG0001651 (Archaeplastida) Phylogenetic Tree(s): OG0001651_tree ,
OG_05_0001448 (LandPlants) Phylogenetic Tree(s): OG_05_0001448_tree ,
OG_06_0001471 (SeedPlants) Phylogenetic Tree(s): OG_06_0001471_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_04608
Cluster	HCCA: Cluster_129

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00212950	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	Archaeplastida
AT1G58684	No alias	Ribosomal protein S5 family protein	0.12	Archaeplastida
AT1G58983	No alias	Ribosomal protein S5 family protein	0.12	Archaeplastida
AT1G59359	No alias	Ribosomal protein S5 family protein	0.12	Archaeplastida
AT2G41840	No alias	Ribosomal protein S5 family protein	0.2	Archaeplastida
Cpa\|evm.model.tig00020961.135	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	Archaeplastida
Cre01.g039250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
GSVIVT01033299001	No alias	40S ribosomal protein S2-4 OS=Arabidopsis thaliana	0.09	Archaeplastida
LOC_Os03g59310.1	No alias	component RPS2 of SSU proteome	0.15	Archaeplastida
LOC_Os07g10660.1	No alias	component RPS2 of SSU proteome	0.12	Archaeplastida
MA_158470g0010	No alias	component RPS2 of SSU proteome	0.11	Archaeplastida
Mp5g04380.1	No alias	component RPS2 of SSU proteome	0.02	Archaeplastida
Mp5g15970.1	No alias	component RPS2 of SSU proteome	0.2	Archaeplastida
Pp3c20_18740V3.1	No alias	Ribosomal protein S5 family protein	0.08	Archaeplastida
Pp3c23_8410V3.1	No alias	Ribosomal protein S5 family protein	0.07	Archaeplastida
Pp3c24_5780V3.1	No alias	Ribosomal protein S5 family protein	0.15	Archaeplastida
Smo67484	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	Archaeplastida
Solyc04g063290.3.1	No alias	component RPS2 of SSU proteome	0.16	Archaeplastida
Solyc04g074300.3.1	No alias	component RPS2 of SSU proteome	0.17	Archaeplastida
Zm00001e006090_P001	No alias	component RPS2 of SSU proteome	0.1	Archaeplastida
Zm00001e011816_P001	No alias	component RPS2 of SSU proteome	0.1	Archaeplastida
Zm00001e033091_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
BP	GO:0006310	DNA recombination	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005324	Ribosomal_S5_C	169	240
IPR013810	Ribosomal_S5_N	86	150

External Links

No external refs found!

Gb_04608

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation