| MF | GO:0003756 | protein disulfide isomerase activity | IEP | Neighborhood |
| MF | GO:0004103 | choline kinase activity | IEP | Neighborhood |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Neighborhood |
| MF | GO:0004331 | fructose-2,6-bisphosphate 2-phosphatase activity | IEP | Neighborhood |
| BP | GO:0006000 | fructose metabolic process | IEP | Neighborhood |
| BP | GO:0006002 | fructose 6-phosphate metabolic process | IEP | Neighborhood |
| BP | GO:0006003 | fructose 2,6-bisphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0006468 | protein phosphorylation | IEP | Neighborhood |
| BP | GO:0006498 | N-terminal protein lipidation | IEP | Neighborhood |
| BP | GO:0006499 | N-terminal protein myristoylation | IEP | Neighborhood |
| BP | GO:0006661 | phosphatidylinositol biosynthetic process | IEP | Neighborhood |
| BP | GO:0006787 | porphyrin-containing compound catabolic process | IEP | Neighborhood |
| BP | GO:0006793 | phosphorus metabolic process | IEP | Neighborhood |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006833 | water transport | IEP | Neighborhood |
| BP | GO:0006952 | defense response | IEP | Neighborhood |
| BP | GO:0006955 | immune response | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| BP | GO:0008219 | cell death | IEP | Neighborhood |
| CC | GO:0009368 | endopeptidase Clp complex | IEP | Neighborhood |
| CC | GO:0009507 | chloroplast | IEP | Neighborhood |
| CC | GO:0009534 | chloroplast thylakoid | IEP | Neighborhood |
| CC | GO:0009535 | chloroplast thylakoid membrane | IEP | Neighborhood |
| CC | GO:0009579 | thylakoid | IEP | Neighborhood |
| BP | GO:0009583 | detection of light stimulus | IEP | Neighborhood |
| BP | GO:0009607 | response to biotic stimulus | IEP | Neighborhood |
| BP | GO:0009637 | response to blue light | IEP | Neighborhood |
| BP | GO:0009785 | blue light signaling pathway | IEP | Neighborhood |
| MF | GO:0009815 | 1-aminocyclopropane-1-carboxylate oxidase activity | IEP | Neighborhood |
| CC | GO:0009840 | chloroplastic endopeptidase Clp complex | IEP | Neighborhood |
| MF | GO:0009881 | photoreceptor activity | IEP | Neighborhood |
| MF | GO:0009882 | blue light photoreceptor activity | IEP | Neighborhood |
| BP | GO:0009902 | chloroplast relocation | IEP | Neighborhood |
| BP | GO:0010038 | response to metal ion | IEP | Neighborhood |
| BP | GO:0010044 | response to aluminum ion | IEP | Neighborhood |
| BP | GO:0010148 | transpiration | IEP | Neighborhood |
| BP | GO:0010155 | regulation of proton transport | IEP | Neighborhood |
| BP | GO:0010190 | cytochrome b6f complex assembly | IEP | Neighborhood |
| BP | GO:0010322 | regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Neighborhood |
| BP | GO:0010343 | singlet oxygen-mediated programmed cell death | IEP | Neighborhood |
| BP | GO:0010375 | stomatal complex patterning | IEP | Neighborhood |
| BP | GO:0010380 | regulation of chlorophyll biosynthetic process | IEP | Neighborhood |
| BP | GO:0010617 | circadian regulation of calcium ion oscillation | IEP | Neighborhood |
| BP | GO:0010675 | regulation of cellular carbohydrate metabolic process | IEP | Neighborhood |
| BP | GO:0012501 | programmed cell death | IEP | Neighborhood |
| BP | GO:0015996 | chlorophyll catabolic process | IEP | Neighborhood |
| BP | GO:0016310 | phosphorylation | IEP | Neighborhood |
| MF | GO:0016688 | L-ascorbate peroxidase activity | IEP | Neighborhood |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Neighborhood |
| MF | GO:0016864 | intramolecular oxidoreductase activity, transposing S-S bonds | IEP | Neighborhood |
| BP | GO:0016999 | antibiotic metabolic process | IEP | Neighborhood |
| BP | GO:0017001 | antibiotic catabolic process | IEP | Neighborhood |
| BP | GO:0017004 | cytochrome complex assembly | IEP | Neighborhood |
| BP | GO:0017038 | protein import | IEP | Neighborhood |
| BP | GO:0018377 | protein myristoylation | IEP | Neighborhood |
| BP | GO:0019220 | regulation of phosphate metabolic process | IEP | Neighborhood |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| BP | GO:0019637 | organophosphate metabolic process | IEP | Neighborhood |
| BP | GO:0019747 | regulation of isoprenoid metabolic process | IEP | Neighborhood |
| BP | GO:0019750 | chloroplast localization | IEP | Neighborhood |
| MF | GO:0019825 | oxygen binding | IEP | Neighborhood |
| BP | GO:0030522 | intracellular receptor signaling pathway | IEP | Neighborhood |
| BP | GO:0031347 | regulation of defense response | IEP | Neighborhood |
| BP | GO:0031365 | N-terminal protein amino acid modification | IEP | Neighborhood |
| CC | GO:0031897 | Tic complex | IEP | Neighborhood |
| CC | GO:0031976 | plastid thylakoid | IEP | Neighborhood |
| BP | GO:0032879 | regulation of localization | IEP | Neighborhood |
| BP | GO:0033015 | tetrapyrrole catabolic process | IEP | Neighborhood |
| CC | GO:0034357 | photosynthetic membrane | IEP | Neighborhood |
| BP | GO:0034762 | regulation of transmembrane transport | IEP | Neighborhood |
| BP | GO:0034765 | regulation of ion transmembrane transport | IEP | Neighborhood |
| BP | GO:0035303 | regulation of dephosphorylation | IEP | Neighborhood |
| BP | GO:0035304 | regulation of protein dephosphorylation | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| BP | GO:0036473 | cell death in response to oxidative stress | IEP | Neighborhood |
| BP | GO:0042044 | fluid transport | IEP | Neighborhood |
| BP | GO:0042440 | pigment metabolic process | IEP | Neighborhood |
| CC | GO:0042651 | thylakoid membrane | IEP | Neighborhood |
| BP | GO:0042737 | drug catabolic process | IEP | Neighborhood |
| BP | GO:0042743 | hydrogen peroxide metabolic process | IEP | Neighborhood |
| BP | GO:0042744 | hydrogen peroxide catabolic process | IEP | Neighborhood |
| BP | GO:0042793 | plastid transcription | IEP | Neighborhood |
| BP | GO:0043207 | response to external biotic stimulus | IEP | Neighborhood |
| BP | GO:0043269 | regulation of ion transport | IEP | Neighborhood |
| BP | GO:0043609 | regulation of carbon utilization | IEP | Neighborhood |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Neighborhood |
| CC | GO:0044436 | thylakoid part | IEP | Neighborhood |
| BP | GO:0044743 | protein transmembrane import into intracellular organelle | IEP | Neighborhood |
| BP | GO:0045036 | protein targeting to chloroplast | IEP | Neighborhood |
| BP | GO:0045037 | protein import into chloroplast stroma | IEP | Neighborhood |
| BP | GO:0045038 | protein import into chloroplast thylakoid membrane | IEP | Neighborhood |
| BP | GO:0045087 | innate immune response | IEP | Neighborhood |
| BP | GO:0046149 | pigment catabolic process | IEP | Neighborhood |
| BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | Neighborhood |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Neighborhood |
| BP | GO:0046777 | protein autophosphorylation | IEP | Neighborhood |
| BP | GO:0048583 | regulation of response to stimulus | IEP | Neighborhood |
| MF | GO:0050308 | sugar-phosphatase activity | IEP | Neighborhood |
| BP | GO:0051174 | regulation of phosphorus metabolic process | IEP | Neighborhood |
| BP | GO:0051186 | cofactor metabolic process | IEP | Neighborhood |
| BP | GO:0051187 | cofactor catabolic process | IEP | Neighborhood |
| BP | GO:0051480 | regulation of cytosolic calcium ion concentration | IEP | Neighborhood |
| BP | GO:0051644 | plastid localization | IEP | Neighborhood |
| BP | GO:0051656 | establishment of organelle localization | IEP | Neighborhood |
| BP | GO:0051667 | establishment of plastid localization | IEP | Neighborhood |
| BP | GO:0051704 | multi-organism process | IEP | Neighborhood |
| BP | GO:0051707 | response to other organism | IEP | Neighborhood |
| CC | GO:0055035 | plastid thylakoid membrane | IEP | Neighborhood |
| BP | GO:0055085 | transmembrane transport | IEP | Neighborhood |
| BP | GO:0061077 | chaperone-mediated protein folding | IEP | Neighborhood |
| BP | GO:0065002 | intracellular protein transmembrane transport | IEP | Neighborhood |
| MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Neighborhood |
| BP | GO:0071071 | regulation of phospholipid biosynthetic process | IEP | Neighborhood |
| BP | GO:0071483 | cellular response to blue light | IEP | Neighborhood |
| BP | GO:0071806 | protein transmembrane transport | IEP | Neighborhood |
| BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Neighborhood |
| BP | GO:0072596 | establishment of protein localization to chloroplast | IEP | Neighborhood |
| BP | GO:0072598 | protein localization to chloroplast | IEP | Neighborhood |
| BP | GO:0080036 | regulation of cytokinin-activated signaling pathway | IEP | Neighborhood |
| BP | GO:0080037 | negative regulation of cytokinin-activated signaling pathway | IEP | Neighborhood |
| BP | GO:0080134 | regulation of response to stress | IEP | Neighborhood |
| BP | GO:0090056 | regulation of chlorophyll metabolic process | IEP | Neighborhood |
| BP | GO:0090342 | regulation of cell aging | IEP | Neighborhood |
| BP | GO:0097468 | programmed cell death in response to reactive oxygen species | IEP | Neighborhood |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Neighborhood |
| BP | GO:1901401 | regulation of tetrapyrrole metabolic process | IEP | Neighborhood |
| BP | GO:1901463 | regulation of tetrapyrrole biosynthetic process | IEP | Neighborhood |
| BP | GO:1902395 | regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Neighborhood |
| BP | GO:1903725 | regulation of phospholipid metabolic process | IEP | Neighborhood |
| BP | GO:1904062 | regulation of cation transmembrane transport | IEP | Neighborhood |
| BP | GO:2000071 | regulation of defense response by callose deposition | IEP | Neighborhood |
| BP | GO:2000762 | regulation of phenylpropanoid metabolic process | IEP | Neighborhood |
