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  5. Gb_04979

Gb_04979


Description : Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana (sp|o81908|ppr2_arath : 563.0)


Gene families : OG0009137 (Archaeplastida) Phylogenetic Tree(s): OG0009137_tree ,
OG_05_0008015 (LandPlants) Phylogenetic Tree(s): OG_05_0008015_tree ,
OG_06_0005310 (SeedPlants) Phylogenetic Tree(s): OG_06_0005310_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04979
Cluster HCCA: Cluster_175


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 451 479
IPR002885 Pentatricopeptide_repeat 658 685
IPR002885 Pentatricopeptide_repeat 485 512
IPR002885 Pentatricopeptide_repeat 162 191
IPR002885 Pentatricopeptide_repeat 260 289
IPR002885 Pentatricopeptide_repeat 516 563
IPR002885 Pentatricopeptide_repeat 370 419
IPR002885 Pentatricopeptide_repeat 193 241
IPR002885 Pentatricopeptide_repeat 300 349
No external refs found!