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  5. Gb_05150

Gb_05150


Description : component psRPL12 of large ribosomal subunit proteome


Gene families : OG0005000 (Archaeplastida) Phylogenetic Tree(s): OG0005000_tree ,
OG_05_0004365 (LandPlants) Phylogenetic Tree(s): OG_05_0004365_tree ,
OG_06_0005437 (SeedPlants) Phylogenetic Tree(s): OG_06_0005437_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05150
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00109340 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.07 Archaeplastida
AT3G27830 RPL12-A, RPL12 ribosomal protein L12-A 0.09 Archaeplastida
AT3G27850 RPL12-C ribosomal protein L12-C 0.11 Archaeplastida
Cre13.g581650 No alias Protein biosynthesis.organelle translation... 0.13 Archaeplastida
GSVIVT01032454001 No alias Protein biosynthesis.organelle translation... 0.05 Archaeplastida
LOC_Os01g47330.1 No alias component psRPL12 of large ribosomal subunit proteome 0.07 Archaeplastida
LOC_Os05g49320.1 No alias component psRPL12 of large ribosomal subunit proteome 0.08 Archaeplastida
Mp5g15720.1 No alias component psRPL12 of large ribosomal subunit proteome 0.15 Archaeplastida
Pp3c16_2080V3.1 No alias ribosomal protein L12-C 0.11 Archaeplastida
Pp3c25_1440V3.1 No alias ribosomal protein L12-C 0.16 Archaeplastida
Pp3c26_10990V3.1 No alias ribosomal protein L12-A 0.05 Archaeplastida
Pp3c4_24130V3.1 No alias ribosomal protein L12-C 0.13 Archaeplastida
Pp3c5_2700V3.1 No alias ribosomal protein L12-C 0.12 Archaeplastida
Solyc02g086730.3.1 No alias component psRPL12 of large ribosomal subunit proteome 0.04 Archaeplastida
Solyc02g086740.1.1 No alias component psRPL12 of large ribosomal subunit proteome 0.06 Archaeplastida
Zm00001e020247_P001 No alias component psRPL12 of large ribosomal subunit proteome 0.03 Archaeplastida
Zm00001e028001_P001 No alias component psRPL12 of large ribosomal subunit proteome 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Neighborhood
MF GO:0004418 hydroxymethylbilane synthase activity IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Neighborhood
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Neighborhood
MF GO:0008883 glutamyl-tRNA reductase activity IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009538 photosystem I reaction center IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034311 diol metabolic process IEP Neighborhood
BP GO:0034312 diol biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Neighborhood
BP GO:0046165 alcohol biosynthetic process IEP Neighborhood
BP GO:0046173 polyol biosynthetic process IEP Neighborhood
MF GO:0051920 peroxiredoxin activity IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR008932 Ribosomal_L7/L12_oligo 68 115
IPR013823 Ribosomal_L7/L12_C 129 195
No external refs found!