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  5. Gb_05601

Gb_05601


Description : PAP1/TAC3 cofactor of plastid-encoded RNA polymerase


Gene families : OG0004175 (Archaeplastida) Phylogenetic Tree(s): OG0004175_tree ,
OG_05_0006431 (LandPlants) Phylogenetic Tree(s): OG_05_0006431_tree ,
OG_06_0007755 (SeedPlants) Phylogenetic Tree(s): OG_06_0007755_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05601
Cluster HCCA: Cluster_337

Target Alias Description ECC score Gene Family Method Actions
AT3G04260 PTAC3 plastid transcriptionally active 3 0.03 Archaeplastida
GSVIVT01026351001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 Archaeplastida
LOC_Os10g32540.1 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida
MA_10433475g0010 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.05 Archaeplastida
Mp2g04680.1 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.05 Archaeplastida
Solyc04g050540.4.1 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
Zm00001e004642_P001 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008658 penicillin binding IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
BP GO:0032465 regulation of cytokinesis IEP Neighborhood
BP GO:0032954 regulation of cytokinetic process IEP Neighborhood
BP GO:0032955 regulation of division septum assembly IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
MF GO:0033293 monocarboxylic acid binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0051302 regulation of cell division IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1901891 regulation of cell septum assembly IEP Neighborhood
BP GO:1902412 regulation of mitotic cytokinesis IEP Neighborhood
BP GO:1903436 regulation of mitotic cytokinetic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!