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  5. Gb_05671

Gb_05671


Description : CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana (sp|q9s775|pkl_arath : 511.0)


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0009784 (LandPlants) Phylogenetic Tree(s): OG_05_0009784_tree ,
OG_06_0012016 (SeedPlants) Phylogenetic Tree(s): OG_06_0012016_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05671
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00216420 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AMTR_s00071p00058700 evm_27.TU.AmTr_v1... CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.06 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.03 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.02 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.03 Archaeplastida
Cpa|evm.model.tig00000128.11 No alias ISWI chromatin-remodeling complex ATPase CHR17... 0.01 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.01 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00021623.13 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre12.g508150 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Cre16.g647602 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
GSVIVT01017821001 No alias No description available 0.03 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
LOC_Os07g46590.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
MA_10429361g0010 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
MA_10436824g0010 No alias No annotation 0.03 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.03 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.03 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.03 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.04 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.04 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.03 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.02 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
Solyc02g068560.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Solyc06g010240.3.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Solyc08g029130.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.07 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Zm00001e039130_P001 No alias Probable plastid-lipid-associated protein 8,... 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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  • Type GO Term Name Evidence Source
    CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
    BP GO:0000723 telomere maintenance IEP Neighborhood
    MF GO:0003676 nucleic acid binding IEP Neighborhood
    MF GO:0003677 DNA binding IEP Neighborhood
    MF GO:0003824 catalytic activity IEP Neighborhood
    MF GO:0003909 DNA ligase activity IEP Neighborhood
    MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
    MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
    MF GO:0004386 helicase activity IEP Neighborhood
    MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
    MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
    MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
    MF GO:0005515 protein binding IEP Neighborhood
    CC GO:0005634 nucleus IEP Neighborhood
    BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
    BP GO:0006310 DNA recombination IEP Neighborhood
    BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
    BP GO:0006464 cellular protein modification process IEP Neighborhood
    BP GO:0006479 protein methylation IEP Neighborhood
    BP GO:0006606 protein import into nucleus IEP Neighborhood
    BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
    BP GO:0006664 glycolipid metabolic process IEP Neighborhood
    BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
    BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
    BP GO:0006811 ion transport IEP Neighborhood
    BP GO:0006812 cation transport IEP Neighborhood
    BP GO:0006813 potassium ion transport IEP Neighborhood
    BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
    MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
    MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
    BP GO:0008213 protein alkylation IEP Neighborhood
    MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
    MF GO:0008276 protein methyltransferase activity IEP Neighborhood
    CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
    MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
    MF GO:0008373 sialyltransferase activity IEP Neighborhood
    MF GO:0008915 lipid-A-disaccharide synthase activity IEP Neighborhood
    BP GO:0009245 lipid A biosynthetic process IEP Neighborhood
    BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
    BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
    BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
    BP GO:0009987 cellular process IEP Neighborhood
    MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
    MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
    MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
    MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
    BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
    BP GO:0016070 RNA metabolic process IEP Neighborhood
    MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
    MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
    BP GO:0016571 histone methylation IEP Neighborhood
    BP GO:0016579 protein deubiquitination IEP Neighborhood
    MF GO:0016740 transferase activity IEP Neighborhood
    MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
    MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
    MF GO:0016787 hydrolase activity IEP Neighborhood
    MF GO:0016874 ligase activity IEP Neighborhood
    MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
    BP GO:0017038 protein import IEP Neighborhood
    BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
    MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
    MF GO:0019208 phosphatase regulator activity IEP Neighborhood
    MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
    MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
    MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
    BP GO:0030001 metal ion transport IEP Neighborhood
    BP GO:0032200 telomere organization IEP Neighborhood
    BP GO:0034220 ion transmembrane transport IEP Neighborhood
    BP GO:0034504 protein localization to nucleus IEP Neighborhood
    BP GO:0034968 histone lysine methylation IEP Neighborhood
    BP GO:0036211 protein modification process IEP Neighborhood
    BP GO:0036260 RNA capping IEP Neighborhood
    MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
    MF GO:0042054 histone methyltransferase activity IEP Neighborhood
    MF GO:0042393 histone binding IEP Neighborhood
    MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
    BP GO:0042592 homeostatic process IEP Neighborhood
    BP GO:0043170 macromolecule metabolic process IEP Neighborhood
    CC GO:0043227 membrane-bounded organelle IEP Neighborhood
    CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
    MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
    BP GO:0043631 RNA polyadenylation IEP Neighborhood
    BP GO:0044237 cellular metabolic process IEP Neighborhood
    BP GO:0044238 primary metabolic process IEP Neighborhood
    BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
    BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
    BP GO:0046483 heterocycle metabolic process IEP Neighborhood
    BP GO:0046493 lipid A metabolic process IEP Neighborhood
    MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
    BP GO:0051169 nuclear transport IEP Neighborhood
    BP GO:0051170 import into nucleus IEP Neighborhood
    BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
    MF GO:0070566 adenylyltransferase activity IEP Neighborhood
    MF GO:0070568 guanylyltransferase activity IEP Neighborhood
    BP GO:0070646 protein modification by small protein removal IEP Neighborhood
    BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
    BP GO:0071704 organic substance metabolic process IEP Neighborhood
    BP GO:0071804 cellular potassium ion transport IEP Neighborhood
    BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
    BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
    BP GO:0098655 cation transmembrane transport IEP Neighborhood
    BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
    BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
    MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
    BP GO:1901269 lipooligosaccharide metabolic process IEP Neighborhood
    BP GO:1901271 lipooligosaccharide biosynthetic process IEP Neighborhood
    BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
    CC GO:1903293 phosphatase complex IEP Neighborhood
    BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
    InterPro domains Description Start Stop
    IPR001650 Helicase_C 1272 1385
    IPR023780 Chromo_domain 776 824
    IPR023780 Chromo_domain 870 921
    IPR000330 SNF2_N 972 1248
    IPR019787 Znf_PHD-finger 708 756
    No external refs found!