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  5. Gb_05917

Gb_05917


Description : proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex


Gene families : OG0002435 (Archaeplastida) Phylogenetic Tree(s): OG0002435_tree ,
OG_05_0006809 (LandPlants) Phylogenetic Tree(s): OG_05_0006809_tree ,
OG_06_0009933 (SeedPlants) Phylogenetic Tree(s): OG_06_0009933_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05917
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AT5G45390 NCLPP4, CLPP4 CLP protease P4 0.03 Archaeplastida
Cre12.g500950 No alias Protein degradation.peptidase families.serine-type... 0.04 Archaeplastida
GSVIVT01020796001 No alias Protein degradation.peptidase families.serine-type... 0.04 Archaeplastida
LOC_Os01g32350.1 No alias proteolytic core component ClpP1/3-6 of chloroplast... 0.02 Archaeplastida
MA_159916g0010 No alias proteolytic core component ClpP1/3-6 of chloroplast... 0.02 Archaeplastida
MA_164820g0010 No alias proteolytic core component ClpP1/3-6 of chloroplast... 0.02 Archaeplastida
Pp3c14_13060V3.1 No alias CLP protease proteolytic subunit 3 0.03 Archaeplastida
Pp3c16_20770V3.1 No alias CLP protease P4 0.06 Archaeplastida
Zm00001e002511_P002 No alias proteolytic core component ClpP1/3-6 of chloroplast... 0.04 Archaeplastida
Zm00001e026353_P001 No alias proteolytic core component ClpP1/3-6 of chloroplast... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 102 278
No external refs found!