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  5. AT2G21420

AT2G21420


Description : IBR domain containing protein


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0004760 (LandPlants) Phylogenetic Tree(s): OG_05_0004760_tree ,
OG_06_0003098 (SeedPlants) Phylogenetic Tree(s): OG_06_0003098_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G21420
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.07 Archaeplastida
AT2G25370 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G26130 No alias RING/U-box protein with C6HC-type zinc finger 0.01 Archaeplastida
AT3G43180 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G43750 No alias RING/U-box protein with C6HC-type zinc finger domain 0.03 Archaeplastida
AT3G45460 No alias IBR domain containing protein 0.08 Archaeplastida
AT3G45470 No alias IBR domain containing protein 0.05 Archaeplastida
AT3G45480 No alias RING/U-box protein with C6HC-type zinc finger 0.08 Archaeplastida
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.05 Archaeplastida
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.08 Archaeplastida
AT3G45560 No alias zinc finger (C3HC4-type RING finger) family protein 0.08 Archaeplastida
AT3G45570 No alias RING/U-box protein with C6HC-type zinc finger domain 0.09 Archaeplastida
AT3G45580 No alias RING/U-box protein with C6HC-type zinc finger 0.04 Archaeplastida
AT3G53690 No alias RING/U-box superfamily protein 0.05 Archaeplastida
Cpa|evm.model.tig00001128.17 No alias No description available 0.01 Archaeplastida
Cpa|evm.model.tig00021035.20 No alias No description available 0.02 Archaeplastida
GSVIVT01016056001 No alias Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana 0.04 Archaeplastida
LOC_Os09g26470.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 Archaeplastida
Solyc01g110100.4.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003883 CTP synthase activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009299 mRNA transcription IEP Neighborhood
CC GO:0031350 intrinsic component of plastid membrane IEP Neighborhood
CC GO:0031351 integral component of plastid membrane IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 335 382
IPR002867 IBR_dom 257 320
IPR002156 RNaseH_domain 70 172
No external refs found!