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  5. Gb_06715

Gb_06715


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 105.0)


Gene families : OG0000054 (Archaeplastida) Phylogenetic Tree(s): OG0000054_tree ,
OG_05_0000126 (LandPlants) Phylogenetic Tree(s): OG_05_0000126_tree ,
OG_06_0000049 (SeedPlants) Phylogenetic Tree(s): OG_06_0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_06715
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Gb_00282 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Gb_02021 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.06 Archaeplastida
Gb_04681 No alias Uncharacterized mitochondrial protein AtMg00820... 0.05 Archaeplastida
Gb_04745 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.06 Archaeplastida
Gb_05496 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_05895 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.08 Archaeplastida
Gb_05914 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.04 Archaeplastida
Gb_07443 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.08 Archaeplastida
Gb_10193 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.04 Archaeplastida
Gb_12163 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_13694 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_14369 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_14957 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_16624 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.1 Archaeplastida
Gb_17625 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_21706 No alias Uncharacterized mitochondrial protein AtMg00820... 0.08 Archaeplastida
Gb_22530 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_22939 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_23035 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.07 Archaeplastida
Gb_25800 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Gb_25980 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_28245 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_29932 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 Archaeplastida
Gb_30484 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_31472 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 Archaeplastida
Gb_31929 No alias Uncharacterized mitochondrial protein AtMg00820... 0.07 Archaeplastida
Gb_32087 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Gb_34818 No alias no hits & (original description: none) 0.08 Archaeplastida
Gb_36407 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_37459 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Gb_37683 No alias no hits & (original description: none) 0.12 Archaeplastida
Gb_37914 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.08 Archaeplastida
Gb_39067 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_41823 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR013103 RVT_2 1 108
No external refs found!