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Gb_06808


Description : Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana (sp|q9lsk8|pp240_arath : 579.0)


Gene families : OG0010054 (Archaeplastida) Phylogenetic Tree(s): OG0010054_tree ,
OG_05_0010084 (LandPlants) Phylogenetic Tree(s): OG_05_0010084_tree ,
OG_06_0008212 (SeedPlants) Phylogenetic Tree(s): OG_06_0008212_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_06808
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
AT3G18020 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
LOC_Os07g47720.1 No alias Pentatricopeptide repeat-containing protein At3g18020... 0.06 Archaeplastida
Solyc03g118790.3.1 No alias Pentatricopeptide repeat-containing protein At3g18020... 0.05 Archaeplastida
Zm00001e010959_P002 No alias Pentatricopeptide repeat-containing protein At3g18020... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 76 99
IPR002885 Pentatricopeptide_repeat 567 590
IPR002885 Pentatricopeptide_repeat 171 199
IPR002885 Pentatricopeptide_repeat 454 487
IPR002885 Pentatricopeptide_repeat 353 402
IPR002885 Pentatricopeptide_repeat 284 332
IPR002885 Pentatricopeptide_repeat 494 543
IPR002885 Pentatricopeptide_repeat 600 648
IPR002885 Pentatricopeptide_repeat 209 256
No external refs found!