Gb_06830

Description : DNA-directed RNA polymerase subunit beta OS=Pinus thunbergii (sp|p41607|rpob_pinth : 400.0)

Gene families : OG0001479 (Archaeplastida) Phylogenetic Tree(s): OG0001479_tree ,
OG_05_0001081 (LandPlants) Phylogenetic Tree(s): OG_05_0001081_tree ,
OG_06_0001102 (SeedPlants) Phylogenetic Tree(s): OG_06_0001102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_06830
Cluster	HCCA: Cluster_89

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00102p00108130	evm_27.TU.AmTr_v1...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.03	Archaeplastida
AMTR_s00145p00090170	evm_27.TU.AmTr_v1...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.03	Archaeplastida
AMTR_s00626p00011520	evm_27.TU.AmTr_v1...	DNA-directed RNA polymerase subunit beta OS=Morus indica	0.03	Archaeplastida
AMTR_s01499p00009870	evm_27.TU.AmTr_v1...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.03	Archaeplastida
ATCG00190	RPOB	RNA polymerase subunit beta	0.03	Archaeplastida
LOC_Os04g16820.1	No alias	RpoB core component plastid-encoded RNA polymerase	0.08	Archaeplastida
LOC_Os05g22830.1	No alias	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.04	Archaeplastida
LOC_Os05g22860.1	No alias	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.07	Archaeplastida
Mp1g13170.1	No alias	DNA-directed RNA polymerase subunit beta OS=Marchantia...	0.09	Archaeplastida
Mp6g01430.1	No alias	no hits & (original description: none)	0.11	Archaeplastida
Mp6g21490.1	No alias	no hits & (original description: none)	0.1	Archaeplastida
Solyc00g500053.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.06	Archaeplastida
Solyc01g095950.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.06	Archaeplastida
Solyc02g067590.2.1	No alias	DNA-directed RNA polymerase subunit beta OS=Liriodendron...	0.06	Archaeplastida
Solyc08g028750.1.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc10g017920.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.07	Archaeplastida
Solyc12g035790.2.1	No alias	regulatory component YCF2 of AAA-ATPase motor complex	0.06	Archaeplastida
Solyc12g035870.3.1	No alias	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.06	Archaeplastida
Zm00001e042040_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e042070_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e042106_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Neighborhood
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
MF	GO:0048038	quinone binding	IEP	Neighborhood
MF	GO:0051287	NAD binding	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:1902600	proton transmembrane transport	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007642	RNA_pol_Rpb2_2	2	131
IPR007120	DNA-dir_RNAP_su2_dom	369	579
IPR007120	DNA-dir_RNAP_su2_dom	270	367

External Links

No external refs found!

Gb_06830

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation