Gb_06963

Description : DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica (sp|a3avh5|rh13_orysj : 697.0)

Gene families : OG0007355 (Archaeplastida) Phylogenetic Tree(s): OG0007355_tree ,
OG_05_0008296 (LandPlants) Phylogenetic Tree(s): OG_05_0008296_tree ,
OG_06_0009645 (SeedPlants) Phylogenetic Tree(s): OG_06_0009645_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_06963
Cluster	HCCA: Cluster_131

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020943.85	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.03	Archaeplastida
Cre01.g022350	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01027957001	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.04	Archaeplastida
LOC_Os04g43140.1	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.05	Archaeplastida
MA_10436248g0010	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.03	Archaeplastida
Mp5g03860.1	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.04	Archaeplastida
Solyc09g090740.4.1	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.03	Archaeplastida
Zm00001e007582_P001	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0030684	preribosome	IEP	Neighborhood
CC	GO:0030688	preribosome, small subunit precursor	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
CC	GO:0032040	small-subunit processome	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	500	608
IPR011545	DEAD/DEAH_box_helicase_dom	220	434

External Links

No external refs found!

Gb_06963

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation