Description : RNA editing factor (ORRM)

Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0003873 (LandPlants) Phylogenetic Tree(s): OG_05_0003873_tree ,
OG_06_0002371 (SeedPlants) Phylogenetic Tree(s): OG_06_0002371_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Gb_07052
Cluster HCCA: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
AT3G23830 GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 0.02 Archaeplastida
AT4G13850 GRP2, ATGRP2, GR-RBP2 glycine-rich RNA-binding protein 2 0.04 Archaeplastida
Cpa|evm.model.tig00000944.16 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01017884001 No alias No description available 0.06 Archaeplastida
MA_10428777g0010 No alias Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba... 0.04 Archaeplastida
Mp3g06220.1 No alias 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia... 0.02 Archaeplastida
Pp3c1_6280V3.1 No alias glycine-rich RNA-binding protein 3 0.02 Archaeplastida
Smo140819 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
Solyc01g104840.4.1 No alias RNA chaperone (RZ1|GR-RBP) 0.05 Archaeplastida
Solyc05g053780.4.1 No alias RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.05 Archaeplastida
Zm00001e008185_P001 No alias Small RNA-binding protein 11, chloroplastic... 0.04 Archaeplastida
Zm00001e018490_P002 No alias Glycine-rich RNA-binding protein 2, mitochondrial... 0.03 Archaeplastida
Zm00001e039608_P001 No alias RNA editing factor (ORRM) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 46 112
No external refs found!