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  5. Gb_09077

Gb_09077


Description : component RPL21 of LSU proteome component


Gene families : OG0001742 (Archaeplastida) Phylogenetic Tree(s): OG0001742_tree ,
OG_05_0002541 (LandPlants) Phylogenetic Tree(s): OG_05_0002541_tree ,
OG_06_0002619 (SeedPlants) Phylogenetic Tree(s): OG_06_0002619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_09077
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252940 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
AMTR_s00024p00178920 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
AT1G09590 No alias Translation protein SH3-like family protein 0.14 Archaeplastida
AT1G09690 No alias Translation protein SH3-like family protein 0.13 Archaeplastida
AT1G57660 No alias Translation protein SH3-like family protein 0.08 Archaeplastida
Cpa|evm.model.tig00000640.5 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
Cre06.g278135 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
GSVIVT01001130001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
GSVIVT01033444001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
GSVIVT01033455001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
LOC_Os03g04750.1 No alias component RPL21 of LSU proteome component 0.17 Archaeplastida
LOC_Os10g32820.1 No alias component RPL21 of LSU proteome component 0.1 Archaeplastida
MA_186351g0010 No alias component RPL21 of LSU proteome component 0.06 Archaeplastida
MA_40819g0010 No alias component RPL21 of LSU proteome component 0.03 Archaeplastida
Mp6g01390.1 No alias component RPL21 of LSU proteome component 0.2 Archaeplastida
Pp3c12_9320V3.1 No alias Translation protein SH3-like family protein 0.14 Archaeplastida
Pp3c13_2360V3.1 No alias Translation protein SH3-like family protein 0.13 Archaeplastida
Pp3c3_5550V3.1 No alias Translation protein SH3-like family protein 0.14 Archaeplastida
Pp3c4_21520V3.1 No alias Translation protein SH3-like family protein 0.12 Archaeplastida
Smo170832 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
Solyc10g078960.2.1 No alias component RPL21 of LSU proteome component 0.19 Archaeplastida
Solyc10g080590.2.1 No alias component RPL21 of LSU proteome component 0.17 Archaeplastida
Zm00001e000341_P001 No alias component RPL21 of LSU proteome component 0.09 Archaeplastida
Zm00001e004623_P001 No alias component RPL21 of LSU proteome component 0.06 Archaeplastida
Zm00001e012727_P001 No alias component RPL21 of LSU proteome component 0.1 Archaeplastida
Zm00001e038963_P001 No alias component RPL21 of LSU proteome component 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR001147 Ribosomal_L21e 1 101
No external refs found!