Gb_10248

Description : component RPL36 of LSU proteome component

Gene families : OG0002126 (Archaeplastida) Phylogenetic Tree(s): OG0002126_tree ,
OG_05_0001928 (LandPlants) Phylogenetic Tree(s): OG_05_0001928_tree ,
OG_06_0001842 (SeedPlants) Phylogenetic Tree(s): OG_06_0001842_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_10248
Cluster	HCCA: Cluster_323

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00179170	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	Archaeplastida
AT2G37600	No alias	Ribosomal protein L36e family protein	0.12	Archaeplastida
AT3G53740	No alias	Ribosomal protein L36e family protein	0.14	Archaeplastida
AT5G02450	No alias	Ribosomal protein L36e family protein	0.15	Archaeplastida
Cpa\|evm.model.tig00021493.69	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	Archaeplastida
Cre12.g484050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	Archaeplastida
GSVIVT01026914001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	Archaeplastida
GSVIVT01028917001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
LOC_Os01g62350.1	No alias	component RPL36 of LSU proteome component	0.1	Archaeplastida
LOC_Os05g38520.1	No alias	component RPL36 of LSU proteome component	0.18	Archaeplastida
MA_10430792g0010	No alias	component RPL36 of LSU proteome component	0.1	Archaeplastida
MA_24782g0010	No alias	component RPL36 of LSU proteome component	0.04	Archaeplastida
Mp1g05460.1	No alias	component RPL36 of LSU proteome component	0.14	Archaeplastida
Pp3c14_19960V3.1	No alias	Ribosomal protein L36e family protein	0.18	Archaeplastida
Pp3c1_32310V3.1	No alias	Ribosomal protein L36e family protein	0.11	Archaeplastida
Pp3c2_9650V3.1	No alias	Ribosomal protein L36e family protein	0.16	Archaeplastida
Smo267958	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	Archaeplastida
Smo439710	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	Archaeplastida
Solyc03g025520.4.1	No alias	component RPL36 of LSU proteome component	0.03	Archaeplastida
Zm00001e027238_P001	No alias	component RPL36 of LSU proteome component	0.12	Archaeplastida
Zm00001e031832_P002	No alias	component RPL36 of LSU proteome component	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
CC	GO:0035145	exon-exon junction complex	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000509	Ribosomal_L36e	8	101

External Links

No external refs found!

Gb_10248

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation