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  5. Gb_10415

Gb_10415


Description : DNA-directed RNA polymerase subunit beta OS=Pinus koraiensis (sp|q85x62|rpoc2_pinko : 220.0)


Gene families : OG0000707 (Archaeplastida) Phylogenetic Tree(s): OG0000707_tree ,
OG_05_0001017 (LandPlants) Phylogenetic Tree(s): OG_05_0001017_tree ,
OG_06_0000818 (SeedPlants) Phylogenetic Tree(s): OG_06_0000818_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_10415
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00130230 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.02 Archaeplastida
AMTR_s00390p00012910 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.02 Archaeplastida
ATCG00170 RPOC2 DNA-directed RNA polymerase family protein 0.05 Archaeplastida
ATCG00180 RPOC1 DNA-directed RNA polymerase family protein 0.04 Archaeplastida
GSVIVT01019173001 No alias DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.05 Archaeplastida
LOC_Os02g24614.1 No alias RpoC1 core component plastid-encoded RNA polymerase 0.1 Archaeplastida
LOC_Os04g16830.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.08 Archaeplastida
Mp1g00060.1 No alias RpoC2 core component plastid-encoded RNA polymerase 0.1 Archaeplastida
Mp4g02290.1 No alias DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.04 Archaeplastida
Mp4g05220.1 No alias No annotation 0.05 Archaeplastida
Mp5g11220.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc00g500052.1.1 No alias RpoC1 core component plastid-encoded RNA polymerase.... 0.1 Archaeplastida
Solyc00g500135.1.1 No alias RpoC1 core component plastid-encoded RNA polymerase.... 0.1 Archaeplastida
Solyc00g500205.1.1 No alias RpoC1 core component plastid-encoded RNA polymerase.... 0.1 Archaeplastida
Solyc00g500290.1.1 No alias RpoC2 core component plastid-encoded RNA polymerase 0.04 Archaeplastida
Solyc01g017370.2.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.09 Archaeplastida
Solyc01g017470.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.1 Archaeplastida
Solyc11g062110.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.1 Archaeplastida
Zm00001e042060_P001 No alias RpoC2 core component plastid-encoded RNA polymerase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0042773 ATP synthesis coupled electron transport IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!