Gb_10627

Description : U-box domain-containing protein 13 OS=Arabidopsis thaliana (sp|q9snc6|pub13_arath : 282.0)

Gene families : OG0000227 (Archaeplastida) Phylogenetic Tree(s): OG0000227_tree ,
OG_05_0006351 (LandPlants) Phylogenetic Tree(s): OG_05_0006351_tree ,
OG_06_0007923 (SeedPlants) Phylogenetic Tree(s): OG_06_0007923_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_10627
Cluster	HCCA: Cluster_98

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00030110	evm_27.TU.AmTr_v1...	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.06	Archaeplastida
AMTR_s00007p00217990	evm_27.TU.AmTr_v1...	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00025p00052670	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
AMTR_s00072p00171260	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.05	Archaeplastida
AMTR_s00153p00035720	evm_27.TU.AmTr_v1...	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	Archaeplastida
AT1G10560	PUB18, ATPUB18	plant U-box 18	0.05	Archaeplastida
AT1G23030	No alias	ARM repeat superfamily protein	0.03	Archaeplastida
AT1G29340	ATPUB17, PUB17	plant U-box 17	0.06	Archaeplastida
AT1G71020	No alias	ARM repeat superfamily protein	0.02	Archaeplastida
AT5G01830	No alias	ARM repeat superfamily protein	0.03	Archaeplastida
AT5G42340	PUB15	Plant U-Box 15	0.02	Archaeplastida
GSVIVT01007275001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
GSVIVT01016225001	No alias	U-box domain-containing protein 14 OS=Arabidopsis thaliana	0.08	Archaeplastida
GSVIVT01021265001	No alias	U-box domain-containing protein 17 OS=Arabidopsis thaliana	0.06	Archaeplastida
GSVIVT01023893001	No alias	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01030205001	No alias	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.02	Archaeplastida
Gb_08792	No alias	U-box domain-containing protein 1 OS=Medicago truncatula...	0.05	Archaeplastida
Gb_10871	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Gb_20805	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
Gb_24091	No alias	U-box domain-containing protein 14 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os01g60860.1	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os02g13960.1	No alias	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os02g28720.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
LOC_Os02g49950.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
LOC_Os03g16824.1	No alias	E3 ubiquitin ligase (PUB)	0.05	Archaeplastida
LOC_Os05g39930.1	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.05	Archaeplastida
LOC_Os06g01304.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
LOC_Os06g51130.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os08g37570.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	Archaeplastida
MA_365628g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_9917294g0010	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
Pp3c13_16440V3.1	No alias	plant U-box 13	0.02	Archaeplastida
Pp3c23_15760V3.1	No alias	plant U-box 13	0.02	Archaeplastida
Pp3c23_8770V3.1	No alias	plant U-box 14	0.02	Archaeplastida
Smo113592	No alias	U-box domain-containing protein 2 OS=Arabidopsis thaliana	0.03	Archaeplastida
Smo415326	No alias	U-box domain-containing protein 1 OS=Medicago truncatula	0.02	Archaeplastida
Smo61948	No alias	U-box domain-containing protein 13 OS=Arabidopsis thaliana	0.02	Archaeplastida
Smo75609	No alias	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	Archaeplastida
Solyc02g072080.1.1	No alias	U-box domain-containing protein 17 OS=Arabidopsis...	0.07	Archaeplastida
Solyc04g082440.4.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.04	Archaeplastida
Solyc06g076040.3.1	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
Solyc09g018230.1.1	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
Solyc09g056450.4.1	No alias	U-box domain-containing protein 9 OS=Arabidopsis...	0.08	Archaeplastida
Solyc12g094610.3.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e001226_P001	No alias	E3 ubiquitin ligase (PUB)	0.01	Archaeplastida
Zm00001e003398_P001	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e014566_P002	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Zm00001e019429_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e028839_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e031915_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004097	catechol oxidase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Neighborhood
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	224	261
IPR003613	Ubox_domain	5	74

External Links

No external refs found!

Gb_10627

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation