AT2G25420


Description : transducin family protein / WD-40 repeat family protein


Gene families : OG0000601 (Archaeplastida) Phylogenetic Tree(s): OG0000601_tree ,
OG_05_0048386 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0043297 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G25420
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Gb_39002 No alias transcriptional repressor (TPL). transcriptional... 0.02 Archaeplastida
MA_10430083g0010 No alias transcriptional repressor (TPL). transcriptional... 0.02 Archaeplastida
MA_10436445g0020 No alias transcriptional repressor (TPL). transcriptional... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006346 methylation-dependent chromatin silencing RCA Interproscan
BP GO:0007267 cell-cell signaling RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0009616 virus induced gene silencing RCA Interproscan
BP GO:0009855 determination of bilateral symmetry RCA Interproscan
BP GO:0010014 meristem initiation RCA Interproscan
BP GO:0010050 vegetative phase change RCA Interproscan
BP GO:0010073 meristem maintenance RCA Interproscan
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Interproscan
BP GO:0031048 chromatin silencing by small RNA RCA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex ISS Interproscan
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
CC GO:0000228 nuclear chromosome IEP Neighborhood
BP GO:0000278 mitotic cell cycle IEP Neighborhood
CC GO:0000418 RNA polymerase IV complex IEP Neighborhood
CC GO:0000419 RNA polymerase V complex IEP Neighborhood
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
CC GO:0000791 euchromatin IEP Neighborhood
CC GO:0000793 condensed chromosome IEP Neighborhood
CC GO:0000794 condensed nuclear chromosome IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
BP GO:0003002 regionalization IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004076 biotin synthase activity IEP Neighborhood
MF GO:0004312 fatty acid synthase activity IEP Neighborhood
MF GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005719 nuclear euchromatin IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005834 heterotrimeric G-protein complex IEP Neighborhood
BP GO:0006084 acetyl-CoA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006637 acyl-CoA metabolic process IEP Neighborhood
BP GO:0006768 biotin metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007015 actin filament organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007020 microtubule nucleation IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007166 cell surface receptor signaling pathway IEP Neighborhood
BP GO:0007167 enzyme linked receptor protein signaling pathway IEP Neighborhood
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
BP GO:0009102 biotin biosynthetic process IEP Neighborhood
BP GO:0009107 lipoate biosynthetic process IEP Neighborhood
MF GO:0009374 biotin binding IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0009624 response to nematode IEP Neighborhood
BP GO:0009740 gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0009756 carbohydrate mediated signaling IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0009880 embryonic pattern specification IEP Neighborhood
BP GO:0009887 animal organ morphogenesis IEP Neighborhood
MF GO:0009899 ent-kaurene synthase activity IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009933 meristem structural organization IEP Neighborhood
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP Neighborhood
BP GO:0009955 adaxial/abaxial pattern specification IEP Neighborhood
BP GO:0009956 radial pattern formation IEP Neighborhood
BP GO:0009965 leaf morphogenesis IEP Neighborhood
BP GO:0010016 shoot system morphogenesis IEP Neighborhood
BP GO:0010051 xylem and phloem pattern formation IEP Neighborhood
BP GO:0010072 primary shoot apical meristem specification IEP Neighborhood
BP GO:0010075 regulation of meristem growth IEP Neighborhood
BP GO:0010090 trichome morphogenesis IEP Neighborhood
BP GO:0010162 seed dormancy process IEP Neighborhood
BP GO:0010182 sugar mediated signaling pathway IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
BP GO:0010431 seed maturation IEP Neighborhood
BP GO:0010476 gibberellin mediated signaling pathway IEP Neighborhood
BP GO:0010492 maintenance of shoot apical meristem identity IEP Neighborhood
BP GO:0010495 long-distance posttranscriptional gene silencing IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
CC GO:0012505 endomembrane system IEP Neighborhood
CC GO:0015030 Cajal body IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016207 4-coumarate-CoA ligase activity IEP Neighborhood
BP GO:0016246 RNA interference IEP Neighborhood
BP GO:0016441 posttranscriptional gene silencing IEP Neighborhood
BP GO:0016444 somatic cell DNA recombination IEP Neighborhood
CC GO:0016604 nuclear body IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016783 sulfurtransferase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0016992 lipoate synthase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
BP GO:0019915 lipid storage IEP Neighborhood
BP GO:0021700 developmental maturation IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
BP GO:0022611 dormancy process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0030838 positive regulation of actin filament polymerization IEP Neighborhood
BP GO:0031334 positive regulation of protein complex assembly IEP Neighborhood
BP GO:0031497 chromatin assembly IEP Neighborhood
BP GO:0031507 heterochromatin assembly IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032273 positive regulation of protein polymerization IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
MF GO:0033293 monocarboxylic acid binding IEP Neighborhood
CC GO:0033597 mitotic checkpoint complex IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0035194 posttranscriptional gene silencing by RNA IEP Neighborhood
MF GO:0035197 siRNA binding IEP Neighborhood
BP GO:0035383 thioester metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044089 positive regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0045010 actin nucleation IEP Neighborhood
BP GO:0045595 regulation of cell differentiation IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0048229 gametophyte development IEP Neighborhood
BP GO:0048366 leaf development IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048451 petal formation IEP Neighborhood
BP GO:0048453 sepal formation IEP Neighborhood
BP GO:0048469 cell maturation IEP Neighborhood
BP GO:0048509 regulation of meristem development IEP Neighborhood
BP GO:0048532 anatomical structure arrangement IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048609 multicellular organismal reproductive process IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048764 trichoblast maturation IEP Neighborhood
BP GO:0048765 root hair cell differentiation IEP Neighborhood
BP GO:0048825 cotyledon development IEP Neighborhood
BP GO:0048827 phyllome development IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0050826 response to freezing IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051495 positive regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0060771 phyllotactic patterning IEP Neighborhood
BP GO:0060772 leaf phyllotactic patterning IEP Neighborhood
BP GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning IEP Neighborhood
BP GO:0061062 regulation of nematode larval development IEP Neighborhood
MF GO:0061980 regulatory RNA binding IEP Neighborhood
BP GO:0065001 specification of axis polarity IEP Neighborhood
BP GO:0070828 heterochromatin organization IEP Neighborhood
BP GO:0070919 production of siRNA involved in chromatin silencing by small RNA IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071695 anatomical structure maturation IEP Neighborhood
BP GO:0080060 integument development IEP Neighborhood
BP GO:0080188 RNA-directed DNA methylation IEP Neighborhood
BP GO:0090421 embryonic meristem initiation IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0097435 supramolecular fiber organization IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:0099402 plant organ development IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
CC GO:1905360 GTPase complex IEP Neighborhood
BP GO:1905392 plant organ morphogenesis IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 505 565
No external refs found!