1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G09520

AT1G09520


Description : LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).


Gene families : OG0007400 (Archaeplastida) Phylogenetic Tree(s): OG0007400_tree ,
OG_05_0005438 (LandPlants) Phylogenetic Tree(s): OG_05_0005438_tree ,
OG_06_0003914 (SeedPlants) Phylogenetic Tree(s): OG_06_0003914_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G09520
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
LOC_Os05g19620.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc01g101160.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Neighborhood
MF GO:0000287 magnesium ion binding IEP Neighborhood
CC GO:0000932 P-body IEP Neighborhood
MF GO:0000976 transcription regulatory region sequence-specific DNA binding IEP Neighborhood
MF GO:0000987 proximal promoter sequence-specific DNA binding IEP Neighborhood
BP GO:0001709 cell fate determination IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0003997 acyl-CoA oxidase activity IEP Neighborhood
MF GO:0004551 nucleotide diphosphatase activity IEP Neighborhood
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP Neighborhood
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Neighborhood
MF GO:0005354 galactose transmembrane transporter activity IEP Neighborhood
MF GO:0005539 glycosaminoglycan binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005885 Arp2/3 protein complex IEP Neighborhood
BP GO:0006446 regulation of translational initiation IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0006855 drug transmembrane transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
MF GO:0008327 methyl-CpG binding IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0010090 trichome morphogenesis IEP Neighborhood
CC GO:0010369 chromocenter IEP Neighborhood
MF GO:0015145 monosaccharide transmembrane transporter activity IEP Neighborhood
MF GO:0015149 hexose transmembrane transporter activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016778 diphosphotransferase activity IEP Neighborhood
MF GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017151 DEAD/H-box RNA helicase binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
MF GO:0035064 methylated histone binding IEP Neighborhood
CC GO:0035770 ribonucleoprotein granule IEP Neighborhood
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0042834 peptidoglycan binding IEP Neighborhood
MF GO:0043530 adenosine 5'-monophosphoramidase activity IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0047627 adenylylsulfatase activity IEP Neighborhood
MF GO:0047710 bis(5'-adenosyl)-triphosphatase activity IEP Neighborhood
MF GO:0050072 m7G(5')pppN diphosphatase activity IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051445 regulation of meiotic cell cycle IEP Neighborhood
BP GO:0051446 positive regulation of meiotic cell cycle IEP Neighborhood
MF GO:0070567 cytidylyltransferase activity IEP Neighborhood
MF GO:0080025 phosphatidylinositol-3,5-bisphosphate binding IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
MF GO:0140030 modification-dependent protein binding IEP Neighborhood
MF GO:0140034 methylation-dependent protein binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1900055 regulation of leaf senescence IEP Neighborhood
BP GO:1900056 negative regulation of leaf senescence IEP Neighborhood
MF GO:1901981 phosphatidylinositol phosphate binding IEP Neighborhood
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Neighborhood
BP GO:1905622 negative regulation of leaf development IEP Neighborhood
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Neighborhood
BP GO:2000024 regulation of leaf development IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!