Gb_12008

Description : Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana (sp|q94aj5|pglr5_arath : 383.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 219.7)

Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000273 (LandPlants) Phylogenetic Tree(s): OG_05_0000273_tree ,
OG_06_0000208 (SeedPlants) Phylogenetic Tree(s): OG_06_0000208_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_12008
Cluster	HCCA: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00197210	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.03	Archaeplastida
AMTR_s00096p00105250	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.04	Archaeplastida
AT1G10640	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
LOC_Os05g46520.1	No alias	Probable polygalacturonase At1g80170 OS=Arabidopsis...	0.03	Archaeplastida
MA_427851g0010	No alias	Polygalacturonase OS=Cryptomeria japonica...	0.02	Archaeplastida
MA_754919g0010	No alias	Polygalacturonase OS=Actinidia deliciosa...	0.02	Archaeplastida
Smo78038	No alias	Cell wall.pectin.modification and...	0.03	Archaeplastida
Solyc04g008230.3.1	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Solyc09g098270.4.1	No alias	No annotation	0.02	Archaeplastida
Solyc12g019140.3.1	No alias	Polygalacturonase OS=Prunus persica...	0.04	Archaeplastida
Zm00001e027946_P001	No alias	polygalacturonase (PGX1)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004476	mannose-6-phosphate isomerase activity	IEP	Neighborhood
MF	GO:0005507	copper ion binding	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0010274	hydrotropism	IEP	Neighborhood
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Neighborhood
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Neighborhood
MF	GO:0043531	ADP binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	123	447

External Links

No external refs found!

Gb_12008

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation