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  5. Gb_12277

Gb_12277


Description : SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana (sp|f4jcu0|sua_arath : 669.0)


Gene families : OG0004416 (Archaeplastida) Phylogenetic Tree(s): OG0004416_tree ,
OG_05_0004027 (LandPlants) Phylogenetic Tree(s): OG_05_0004027_tree ,
OG_06_0006584 (SeedPlants) Phylogenetic Tree(s): OG_06_0006584_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_12277
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00089100 evm_27.TU.AmTr_v1... SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre03.g184350 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01013204001 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.02 Archaeplastida
Mp1g04870.1 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Pp3c10_21700V3.1 No alias suppressor of abi3-5 0.02 Archaeplastida
Smo402018 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc08g077310.3.1 No alias SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000467 G_patch_dom 844 885
IPR000504 RRM_dom 122 180
IPR000504 RRM_dom 286 352
No external refs found!