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  5. Gb_13209

Gb_13209


Description : 50S ribosomal protein L24, chloroplastic OS=Spinacia oleracea (sp|p27683|rk24_spiol : 97.1)


Gene families : OG0002020 (Archaeplastida) Phylogenetic Tree(s): OG0002020_tree ,
OG_05_0007124 (LandPlants) Phylogenetic Tree(s): OG_05_0007124_tree ,
OG_06_0009316 (SeedPlants) Phylogenetic Tree(s): OG_06_0009316_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_13209
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AT5G54600 No alias Translation protein SH3-like family protein 0.12 Archaeplastida
Cre07.g330450 No alias Protein biosynthesis.organelle translation... 0.02 Archaeplastida
Cre16.g652550 No alias Protein biosynthesis.organelle translation... 0.08 Archaeplastida
GSVIVT01014572001 No alias Protein biosynthesis.organelle translation... 0.07 Archaeplastida
LOC_Os06g46930.1 No alias component psRPL24 of large ribosomal subunit proteome 0.08 Archaeplastida
MA_9411466g0010 No alias 50S ribosomal protein L24, chloroplastic OS=Spinacia... 0.03 Archaeplastida
Mp3g07850.1 No alias component psRPL24 of large ribosomal subunit proteome 0.13 Archaeplastida
Pp3c15_17530V3.1 No alias Translation protein SH3-like family protein 0.08 Archaeplastida
Pp3c9_9200V3.1 No alias Translation protein SH3-like family protein 0.07 Archaeplastida
Smo230291 No alias Protein biosynthesis.organelle translation... 0.07 Archaeplastida
Solyc07g063960.3.1 No alias component psRPL24 of large ribosomal subunit proteome 0.1 Archaeplastida
Zm00001e013043_P001 No alias component psRPL24 of large ribosomal subunit proteome 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004418 hydroxymethylbilane synthase activity IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006553 lysine metabolic process IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009085 lysine biosynthetic process IEP Neighborhood
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0046451 diaminopimelate metabolic process IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003256 Ribosomal_L24 256 291
IPR005824 KOW 6 36
No external refs found!