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Gb_13708


Description : siRNA-binding factor (AGO2) of non-canonical RdDM pathway


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0002747 (LandPlants) Phylogenetic Tree(s): OG_05_0002747_tree ,
OG_06_0002302 (SeedPlants) Phylogenetic Tree(s): OG_06_0002302_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_13708
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AT1G31290 AGO3 ARGONAUTE 3 0.05 Archaeplastida
MA_10122566g0010 No alias Protein argonaute 10 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10427420g0010 No alias Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_10429131g0010 No alias Protein argonaute 1B OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
MA_14457g0010 No alias Protein argonaute 4A OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_14457g0020 No alias Protein argonaute 4B OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Smo98227 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
Solyc02g069280.2.1 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.02 Archaeplastida
Solyc03g111760.3.1 No alias Protein argonaute 4A OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e016179_P001 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003100 PAZ_dom 395 503
IPR003165 Piwi 679 985
IPR032474 Argonaute_N 170 317
IPR014811 ArgoL1 328 376
No external refs found!