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  5. Gb_13912

Gb_13912


Description : RNA editing factor (OZ-type)


Gene families : OG0001770 (Archaeplastida) Phylogenetic Tree(s): OG0001770_tree ,
OG_05_0001246 (LandPlants) Phylogenetic Tree(s): OG_05_0001246_tree ,
OG_06_0001272 (SeedPlants) Phylogenetic Tree(s): OG_06_0001272_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_13912
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT1G55040 No alias zinc finger (Ran-binding) family protein 0.09 Archaeplastida
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01008444001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_05351 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os03g50120.1 No alias RNA editing factor (OZ-type) 0.04 Archaeplastida
LOC_Os07g22024.1 No alias RNA editing factor (OZ-type) 0.04 Archaeplastida
MA_10434973g0010 No alias RNA editing factor (OZ-type) 0.04 Archaeplastida
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.05 Archaeplastida
MA_10436123g0020 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp5g05510.1 No alias RNA editing factor (OZ-type) 0.02 Archaeplastida
Solyc01g099230.3.1 No alias RNA editing factor (OZ-type) 0.03 Archaeplastida
Zm00001e009343_P002 No alias No annotation 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 370 398
IPR001876 Znf_RanBP2 405 431
No external refs found!