AT2G28510

Description : Dof-type zinc finger DNA-binding family protein

Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0042363 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G28510
Cluster	HCCA: Cluster_165

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00213350	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT1G69570	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
GSVIVT01021086001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
GSVIVT01024986001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
Gb_09906	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os01g17000.1	No alias	transcription factor (DOF)	0.06	Archaeplastida
LOC_Os03g07360.1	No alias	transcription factor (DOF)	0.06	Archaeplastida
LOC_Os03g38870.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
LOC_Os03g60630.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os04g58190.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os07g13260.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
MA_46520g0010	No alias	transcription factor (DOF)	0.04	Archaeplastida
Mp1g18540.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Mp2g20790.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Pp3c13_2000V3.1	No alias	cycling DOF factor 3	0.03	Archaeplastida
Pp3c17_23300V3.1	No alias	cycling DOF factor 3	0.02	Archaeplastida
Pp3c6_13360V3.1	No alias	cycling DOF factor 3	0.04	Archaeplastida
Solyc03g082840.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc06g071480.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc06g075370.3.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e002951_P002	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e005785_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e006190_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e010454_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e012437_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e015414_P004	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e015597_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e019172_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e023218_P004	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e035074_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e041444_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003855	3-dehydroquinate dehydratase activity	IEP	Neighborhood
MF	GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	IEP	Neighborhood
CC	GO:0005856	cytoskeleton	IEP	Neighborhood
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	Neighborhood
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Neighborhood
CC	GO:0015630	microtubule cytoskeleton	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016836	hydro-lyase activity	IEP	Neighborhood
BP	GO:0019632	shikimate metabolic process	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0065001	specification of axis polarity	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	47	102

External Links

No external refs found!

AT2G28510

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation