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  5. Gb_17119

Gb_17119


Description : E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana (sp|q9svc6|pub22_arath : 327.0)


Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0000440 (SeedPlants) Phylogenetic Tree(s): OG_06_0000440_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_17119
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00199950 evm_27.TU.AmTr_v1... U-box domain-containing protein 31 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00030p00130440 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00030p00159240 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00069p00038840 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00138p00053700 evm_27.TU.AmTr_v1... U-box domain-containing protein 21 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT2G35930 PUB23 plant U-box 23 0.06 Archaeplastida
AT3G11840 PUB24 plant U-box 24 0.03 Archaeplastida
AT3G19380 PUB25 plant U-box 25 0.06 Archaeplastida
AT3G52450 PUB22 plant U-box 22 0.03 Archaeplastida
AT5G37490 No alias ARM repeat superfamily protein 0.03 Archaeplastida
AT5G64660 CMPG2, ATCMPG2 CYS, MET, PRO, and GLY protein 2 0.03 Archaeplastida
GSVIVT01011139001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01011140001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01011616001 No alias U-box domain-containing protein 20 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01026542001 No alias U-box domain-containing protein 27 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01031720001 No alias U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.06 Archaeplastida
Gb_16228 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os01g64570.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 Archaeplastida
LOC_Os02g33680.1 No alias U-box domain-containing protein 29 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os02g34410.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os02g50460.1 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os03g13740.1 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os04g34030.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os04g34140.1 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
LOC_Os04g58920.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os06g13870.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os08g04470.1 No alias U-box domain-containing protein 8 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os10g03440.1 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.05 Archaeplastida
MA_10425865g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.05 Archaeplastida
MA_10430196g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 Archaeplastida
MA_10432813g0010 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.05 Archaeplastida
MA_10432981g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
MA_10433846g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
MA_126399g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.02 Archaeplastida
MA_1663g0020 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.08 Archaeplastida
MA_17715g0010 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.08 Archaeplastida
MA_209202g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.05 Archaeplastida
MA_311559g0010 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.05 Archaeplastida
MA_33190g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 Archaeplastida
MA_3784951g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_415344g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 Archaeplastida
MA_481299g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
MA_5536318g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_58844g0020 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 Archaeplastida
MA_779502g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 Archaeplastida
MA_7928010g0010 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.02 Archaeplastida
MA_84154g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
Mp2g06090.1 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Mp3g11730.1 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
Mp3g22740.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 Archaeplastida
Mp3g22750.1 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.03 Archaeplastida
Mp7g11000.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c24_16470V3.1 No alias RING/U-box superfamily protein with ARM repeat domain 0.02 Archaeplastida
Pp3c4_20710V3.1 No alias plant U-box 25 0.02 Archaeplastida
Smo104879 No alias U-box domain-containing protein 25 OS=Arabidopsis thaliana 0.04 Archaeplastida
Smo231257 No alias U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc01g007000.4.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
Solyc01g007010.2.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
Solyc01g007020.4.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
Solyc01g007030.3.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g007040.4.1 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g007050.3.1 No alias E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.05 Archaeplastida
Solyc01g009330.1.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g107980.3.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
Solyc04g008100.3.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.07 Archaeplastida
Solyc04g071030.1.1 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
Solyc06g074140.1.1 No alias E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.06 Archaeplastida
Solyc11g006030.1.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida
Solyc11g068920.1.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Solyc11g068940.1.1 No alias E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e000999_P001 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e006484_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e007108_P001 No alias No annotation 0.02 Archaeplastida
Zm00001e007109_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e008167_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e014752_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e014766_P001 No alias E3 ubiquitin ligase (PUB) 0.05 Archaeplastida
Zm00001e014779_P001 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e015763_P001 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e022679_P001 No alias U-box domain-containing protein 29 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e036030_P001 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Neighborhood
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015936 coenzyme A metabolic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003613 Ubox_domain 8 78
No external refs found!