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  5. Gb_17545

Gb_17545


Description : EF-Tu translation elongation factor


Gene families : OG0001561 (Archaeplastida) Phylogenetic Tree(s): OG0001561_tree ,
OG_05_0005338 (LandPlants) Phylogenetic Tree(s): OG_05_0005338_tree ,
OG_06_0006935 (SeedPlants) Phylogenetic Tree(s): OG_06_0006935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_17545
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00115820 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.05 Archaeplastida
AT4G02930 No alias GTP binding Elongation factor Tu family protein 0.13 Archaeplastida
Cpa|evm.model.tig00021127.40 No alias Protein biosynthesis.organelle translation... 0.01 Archaeplastida
Cre06.g259150 No alias Protein biosynthesis.organelle translation... 0.02 Archaeplastida
GSVIVT01011073001 No alias Protein biosynthesis.organelle translation... 0.09 Archaeplastida
LOC_Os03g63410.1 No alias EF-Tu translation elongation factor 0.14 Archaeplastida
MA_58335g0010 No alias EF-Tu translation elongation factor 0.16 Archaeplastida
Mp1g03870.1 No alias EF-Tu translation elongation factor 0.02 Archaeplastida
Mp1g14750.1 No alias EF-Tu translation elongation factor 0.05 Archaeplastida
Pp3c21_1500V3.1 No alias GTP binding Elongation factor Tu family protein 0.06 Archaeplastida
Pp3c23_5580V3.1 No alias GTP binding Elongation factor Tu family protein 0.05 Archaeplastida
Smo153081 No alias Protein biosynthesis.organelle translation... 0.04 Archaeplastida
Solyc06g008940.4.1 No alias EF-Tu translation elongation factor 0.06 Archaeplastida
Solyc09g073000.3.1 No alias EF-Tu translation elongation factor 0.06 Archaeplastida
Zm00001e006373_P001 No alias EF-Tu translation elongation factor 0.13 Archaeplastida
Zm00001e011649_P001 No alias EF-Tu translation elongation factor 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000795 TF_GTP-bd_dom 196 389
IPR004160 Transl_elong_EFTu/EF1A_C 488 582
IPR004161 EFTu-like_2 413 484
No external refs found!