Gb_17798

Description : pectin methylesterase

Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0001404 (SeedPlants) Phylogenetic Tree(s): OG_06_0001404_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_17798
Cluster	HCCA: Cluster_144

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00085870	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
AMTR_s00056p00166920	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.05	Archaeplastida
AMTR_s00106p00092510	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00116p00025230	evm_27.TU.AmTr_v1...	Probable pectinesterase 8 OS=Arabidopsis thaliana	0.05	Archaeplastida
AT1G11370	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G19730	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G26810	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G47500	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
GSVIVT01014641001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01015290001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
GSVIVT01015852001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.05	Archaeplastida
GSVIVT01031250001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
Gb_27225	No alias	pectin methylesterase	0.05	Archaeplastida
LOC_Os03g19610.1	No alias	pectin methylesterase	0.02	Archaeplastida
LOC_Os05g44600.1	No alias	pectin methylesterase	0.05	Archaeplastida
MA_10428610g0020	No alias	pectin methylesterase	0.03	Archaeplastida
MA_14449g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_181657g0020	No alias	pectin methylesterase	0.02	Archaeplastida
MA_19196g0010	No alias	pectin methylesterase	0.04	Archaeplastida
MA_304854g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_66089g0010	No alias	pectin methylesterase	0.03	Archaeplastida
Mp1g00190.1	No alias	pectin methylesterase	0.03	Archaeplastida
Pp3c10_18650V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c10_20120V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c12_24000V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c18_13190V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c1_6010V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c3_35240V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c5_12660V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c5_23400V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c8_1440V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c8_2010V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c8_460V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Smo81583	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
Solyc04g080530.3.1	No alias	pectin methylesterase	0.04	Archaeplastida
Solyc08g078640.3.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Solyc09g091730.4.1	No alias	pectin methylesterase	0.02	Archaeplastida
Zm00001e032213_P001	No alias	pectin methylesterase	0.02	Archaeplastida
Zm00001e033546_P001	No alias	pectin methylesterase	0.02	Archaeplastida
Zm00001e035522_P001	No alias	pectin methylesterase	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0030258	lipid modification	IEP	Neighborhood
BP	GO:0030259	lipid glycosylation	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	93	379

External Links

No external refs found!

Gb_17798

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation