Gb_18462

Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 652.0)

Gene families : OG0031071 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0028976 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0027394 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_18462
Cluster	HCCA: Cluster_205

Target	Alias	Description	ECC score	Gene Family Method	Actions
MA_40997g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0003989	acetyl-CoA carboxylase activity	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
MF	GO:0016421	CoA carboxylase activity	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
MF	GO:0016885	ligase activity, forming carbon-carbon bonds	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	94	123
IPR002885	Pentatricopeptide_repeat	125	154
IPR002885	Pentatricopeptide_repeat	63	93
IPR002885	Pentatricopeptide_repeat	493	516
IPR002885	Pentatricopeptide_repeat	558	587
IPR002885	Pentatricopeptide_repeat	156	183
IPR002885	Pentatricopeptide_repeat	184	230
IPR002885	Pentatricopeptide_repeat	418	464
IPR002885	Pentatricopeptide_repeat	316	364
IPR032867	DYW_dom	591	715

External Links

No external refs found!

Gb_18462

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation