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  5. Gb_18548

Gb_18548


Description : component RPS4 of SSU proteome


Gene families : OG0002504 (Archaeplastida) Phylogenetic Tree(s): OG0002504_tree ,
OG_05_0002300 (LandPlants) Phylogenetic Tree(s): OG_05_0002300_tree ,
OG_06_0002958 (SeedPlants) Phylogenetic Tree(s): OG_06_0002958_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18548
Cluster HCCA: Cluster_335

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00058440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
AT2G17360 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 Archaeplastida
AT5G07090 No alias Ribosomal protein S4 (RPS4A) family protein 0.04 Archaeplastida
AT5G58420 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 Archaeplastida
Cpa|evm.model.tig00021433.38 No alias 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Cre06.g308250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
GSVIVT01024668001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
LOC_Os01g25610.1 No alias component RPS4 of SSU proteome 0.05 Archaeplastida
LOC_Os02g01560.1 No alias component RPS4 of SSU proteome 0.05 Archaeplastida
LOC_Os05g30530.1 No alias component RPS4 of SSU proteome 0.03 Archaeplastida
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.04 Archaeplastida
Mp8g03290.1 No alias component RPS4 of SSU proteome 0.02 Archaeplastida
Pp3c11_3690V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Archaeplastida
Pp3c1_8290V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.04 Archaeplastida
Pp3c7_23800V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.02 Archaeplastida
Solyc02g070330.4.1 No alias component RPS4 of SSU proteome 0.06 Archaeplastida
Solyc02g070340.3.1 No alias component RPS4 of SSU proteome 0.06 Archaeplastida
Zm00001e006307_P001 No alias component RPS4 of SSU proteome 0.07 Archaeplastida
Zm00001e011676_P001 No alias component RPS4 of SSU proteome 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000077 DNA damage checkpoint IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004470 malic enzyme activity IEP Neighborhood
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016615 malate dehydrogenase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
CC GO:0030896 checkpoint clamp complex IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR013845 Ribosomal_S4e_central_region 95 169
IPR002942 S4_RNA-bd 43 90
IPR032277 40S_S4_C 212 257
IPR005824 KOW 177 210
IPR013843 Ribosomal_S4e_N 3 37
No external refs found!