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  5. Gb_18550

Gb_18550


Description : component RPS4 of SSU proteome


Gene families : OG0002504 (Archaeplastida) Phylogenetic Tree(s): OG0002504_tree ,
OG_05_0002300 (LandPlants) Phylogenetic Tree(s): OG_05_0002300_tree ,
OG_06_0002958 (SeedPlants) Phylogenetic Tree(s): OG_06_0002958_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18550
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT2G17360 No alias Ribosomal protein S4 (RPS4A) family protein 0.02 Archaeplastida
AT5G58420 No alias Ribosomal protein S4 (RPS4A) family protein 0.02 Archaeplastida
LOC_Os02g01560.1 No alias component RPS4 of SSU proteome 0.02 Archaeplastida
MA_127596g0010 No alias component RPS4 of SSU proteome 0.03 Archaeplastida
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.04 Archaeplastida
Pp3c11_3690V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Archaeplastida
Pp3c1_8290V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Archaeplastida
Pp3c25_3730V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 Archaeplastida
Pp3c7_23800V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Archaeplastida
Solyc02g070330.4.1 No alias component RPS4 of SSU proteome 0.02 Archaeplastida
Solyc02g070340.3.1 No alias component RPS4 of SSU proteome 0.02 Archaeplastida
Zm00001e006307_P001 No alias component RPS4 of SSU proteome 0.02 Archaeplastida
Zm00001e011676_P001 No alias component RPS4 of SSU proteome 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043545 molybdopterin cofactor metabolic process IEP Neighborhood
BP GO:0043647 inositol phosphate metabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0046164 alcohol catabolic process IEP Neighborhood
BP GO:0046174 polyol catabolic process IEP Neighborhood
BP GO:0046434 organophosphate catabolic process IEP Neighborhood
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Neighborhood
BP GO:0046855 inositol phosphate dephosphorylation IEP Neighborhood
BP GO:0051189 prosthetic group metabolic process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071545 inositol phosphate catabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901616 organic hydroxy compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 43 90
IPR013845 Ribosomal_S4e_central_region 95 169
IPR032277 40S_S4_C 212 257
IPR005824 KOW 177 210
IPR013843 Ribosomal_S4e_N 3 37
No external refs found!