AT2G32950 (FUS1, EMB168, DET340,...)

Aliases : FUS1, EMB168, DET340, ATCOP1, COP1

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG0000790 (Archaeplastida) Phylogenetic Tree(s): OG0000790_tree ,
OG_05_0003399 (LandPlants) Phylogenetic Tree(s): OG_05_0003399_tree ,
OG_06_0006795 (SeedPlants) Phylogenetic Tree(s): OG_06_0006795_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G32950
Cluster	HCCA: Cluster_1

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cre02.g085050	No alias	E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana	0.01	Archaeplastida
MA_423393g0010	No alias	protein kinase (PEK). regulator component SPA of...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
CC	GO:0000152	nuclear ubiquitin ligase complex	TAS	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	IMP	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IMP	Interproscan
BP	GO:0006281	DNA repair	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009640	photomorphogenesis	IGI	Interproscan
BP	GO:0009640	photomorphogenesis	TAS	Interproscan
BP	GO:0009641	shade avoidance	IMP	Interproscan
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009646	response to absence of light	None	Extended
BP	GO:0009647	skotomorphogenesis	TAS	Interproscan
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009649	entrainment of circadian clock	IMP	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009812	flavonoid metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009962	regulation of flavonoid biosynthetic process	None	Extended
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010099	regulation of photomorphogenesis	None	Extended
BP	GO:0010100	negative regulation of photomorphogenesis	RCA	Interproscan
BP	GO:0010119	regulation of stomatal movement	IMP	Interproscan
BP	GO:0010119	regulation of stomatal movement	IGI	Interproscan
BP	GO:0010224	response to UV-B	IMP	Interproscan
CC	GO:0016604	nuclear body	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
BP	GO:0042752	regulation of circadian rhythm	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044451	nucleoplasm part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046283	anthocyanin-containing compound metabolic process	IMP	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048573	photoperiodism, flowering	IMP	Interproscan
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048608	reproductive structure development	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	ISS	Interproscan
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000030	regulation of response to red or far red light	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000719	photoreactive repair	IEP	Neighborhood
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
MF	GO:0003872	6-phosphofructokinase activity	IEP	Neighborhood
MF	GO:0003883	CTP synthase activity	IEP	Neighborhood
MF	GO:0004022	alcohol dehydrogenase (NAD) activity	IEP	Neighborhood
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	Neighborhood
MF	GO:0004402	histone acetyltransferase activity	IEP	Neighborhood
MF	GO:0004610	phosphoacetylglucosamine mutase activity	IEP	Neighborhood
MF	GO:0004614	phosphoglucomutase activity	IEP	Neighborhood
MF	GO:0004673	protein histidine kinase activity	IEP	Neighborhood
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Neighborhood
MF	GO:0004930	G-protein coupled receptor activity	IEP	Neighborhood
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Neighborhood
CC	GO:0005770	late endosome	IEP	Neighborhood
CC	GO:0005771	multivesicular body	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
CC	GO:0005945	6-phosphofructokinase complex	IEP	Neighborhood
BP	GO:0006040	amino sugar metabolic process	IEP	Neighborhood
BP	GO:0006047	UDP-N-acetylglucosamine metabolic process	IEP	Neighborhood
BP	GO:0006048	UDP-N-acetylglucosamine biosynthetic process	IEP	Neighborhood
BP	GO:0006290	pyrimidine dimer repair	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006342	chromatin silencing	IEP	Neighborhood
BP	GO:0006346	methylation-dependent chromatin silencing	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006560	proline metabolic process	IEP	Neighborhood
BP	GO:0006561	proline biosynthetic process	IEP	Neighborhood
BP	GO:0006625	protein targeting to peroxisome	IEP	Neighborhood
BP	GO:0006813	potassium ion transport	IEP	Neighborhood
BP	GO:0006997	nucleus organization	IEP	Neighborhood
BP	GO:0007031	peroxisome organization	IEP	Neighborhood
BP	GO:0007032	endosome organization	IEP	Neighborhood
MF	GO:0008020	G-protein coupled photoreceptor activity	IEP	Neighborhood
CC	GO:0008076	voltage-gated potassium channel complex	IEP	Neighborhood
MF	GO:0008158	hedgehog receptor activity	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008443	phosphofructokinase activity	IEP	Neighborhood
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Neighborhood
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
MF	GO:0009881	photoreceptor activity	IEP	Neighborhood
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010098	suspensor development	IEP	Neighborhood
BP	GO:0010115	regulation of abscisic acid biosynthetic process	IEP	Neighborhood
BP	GO:0010214	seed coat development	IEP	Neighborhood
MF	GO:0010301	xanthoxin dehydrogenase activity	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015112	nitrate transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015672	monovalent inorganic cation transport	IEP	Neighborhood
BP	GO:0015919	peroxisomal membrane transport	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016050	vesicle organization	IEP	Neighborhood
BP	GO:0016246	RNA interference	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016407	acetyltransferase activity	IEP	Neighborhood
BP	GO:0016441	posttranscriptional gene silencing	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
BP	GO:0016558	protein import into peroxisome matrix	IEP	Neighborhood
BP	GO:0016567	protein ubiquitination	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
BP	GO:0016572	histone phosphorylation	IEP	Neighborhood
BP	GO:0016579	protein deubiquitination	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Neighborhood
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Neighborhood
MF	GO:0016906	sterol 3-beta-glucosyltransferase activity	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
BP	GO:0019255	glucose 1-phosphate metabolic process	IEP	Neighborhood
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
BP	GO:0030422	production of siRNA involved in RNA interference	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
BP	GO:0031048	chromatin silencing by small RNA	IEP	Neighborhood
BP	GO:0031050	dsRNA fragmentation	IEP	Neighborhood
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
BP	GO:0032446	protein modification by small protein conjugation	IEP	Neighborhood
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Neighborhood
CC	GO:0034702	ion channel complex	IEP	Neighborhood
CC	GO:0034703	cation channel complex	IEP	Neighborhood
CC	GO:0034705	potassium channel complex	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
BP	GO:0035194	posttranscriptional gene silencing by RNA	IEP	Neighborhood
BP	GO:0035196	production of miRNAs involved in gene silencing by miRNA	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0038023	signaling receptor activity	IEP	Neighborhood
BP	GO:0040029	regulation of gene expression, epigenetic	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0043574	peroxisomal transport	IEP	Neighborhood
BP	GO:0043622	cortical microtubule organization	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Neighborhood
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	Neighborhood
BP	GO:0045892	negative regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0046349	amino sugar biosynthetic process	IEP	Neighborhood
MF	GO:0048487	beta-tubulin binding	IEP	Neighborhood
BP	GO:0048523	negative regulation of cellular process	IEP	Neighborhood
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051211	anisotropic cell growth	IEP	Neighborhood
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0051567	histone H3-K9 methylation	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
MF	GO:0060089	molecular transducer activity	IEP	Neighborhood
BP	GO:0061647	histone H3-K9 modification	IEP	Neighborhood
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Neighborhood
BP	GO:0070646	protein modification by small protein removal	IEP	Neighborhood
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Neighborhood
MF	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	IEP	Neighborhood
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	IEP	Neighborhood
BP	GO:0071806	protein transmembrane transport	IEP	Neighborhood
BP	GO:0072662	protein localization to peroxisome	IEP	Neighborhood
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	Neighborhood
MF	GO:0080054	low-affinity nitrate transmembrane transporter activity	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
CC	GO:1902495	transmembrane transporter complex	IEP	Neighborhood
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	Neighborhood
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	Neighborhood
CC	GO:1990351	transporter complex	IEP	Neighborhood
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	540	576
IPR001680	WD40_repeat	454	491

External Links

No external refs found!

AT2G32950 (FUS1, EMB168, DET340,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation