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Gb_20198


Description : golgin (GC5/TMF)


Gene families : OG0003240 (Archaeplastida) Phylogenetic Tree(s): OG0003240_tree ,
OG_05_0004501 (LandPlants) Phylogenetic Tree(s): OG_05_0004501_tree ,
OG_06_0004575 (SeedPlants) Phylogenetic Tree(s): OG_06_0004575_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20198
Cluster HCCA: Cluster_336

Target Alias Description ECC score Gene Family Method Actions
LOC_Os05g48620.1 No alias golgin (GC5/TMF) 0.04 Archaeplastida
Solyc06g066610.4.1 No alias golgin (GC5/TMF) 0.04 Archaeplastida
Zm00001e026507_P001 No alias golgin (GC5/TMF) 0.04 Archaeplastida
Zm00001e026510_P001 No alias Golgin candidate 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e032402_P001 No alias golgin (GC5/TMF) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
CC GO:0000776 kinetochore IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004813 alanine-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006419 alanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016972 thiol oxidase activity IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0034508 centromere complex assembly IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
CC GO:0070652 HAUS complex IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR022092 TMF_DNA-bd 467 538
IPR022091 TMF_TATA-bd 886 993
No external refs found!