Coexpression cluster: Cluster_221 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 17.19% (11/64) 2.59 2e-06 0.000314
GO:0034033 purine nucleoside bisphosphate biosynthetic process 3.12% (2/64) 8.02 2.5e-05 0.000726
GO:0034030 ribonucleoside bisphosphate biosynthetic process 3.12% (2/64) 8.02 2.5e-05 0.000726
GO:0033866 nucleoside bisphosphate biosynthetic process 3.12% (2/64) 8.02 2.5e-05 0.000726
GO:0015937 coenzyme A biosynthetic process 3.12% (2/64) 8.02 2.5e-05 0.000726
GO:0004594 pantothenate kinase activity 3.12% (2/64) 8.7 9e-06 0.00078
GO:0015936 coenzyme A metabolic process 3.12% (2/64) 6.32 0.000291 0.007145
GO:0033875 ribonucleoside bisphosphate metabolic process 3.12% (2/64) 5.98 0.00047 0.008091
GO:0034032 purine nucleoside bisphosphate metabolic process 3.12% (2/64) 5.98 0.00047 0.008091
GO:0033865 nucleoside bisphosphate metabolic process 3.12% (2/64) 5.98 0.00047 0.008091
GO:0006139 nucleobase-containing compound metabolic process 7.81% (5/64) 2.88 0.000599 0.009372
GO:0097159 organic cyclic compound binding 21.88% (14/64) 1.36 0.000829 0.010972
GO:1901363 heterocyclic compound binding 21.88% (14/64) 1.36 0.000829 0.010972
GO:0046483 heterocycle metabolic process 7.81% (5/64) 2.71 0.001024 0.011008
GO:0042575 DNA polymerase complex 1.56% (1/64) 10.02 0.00096 0.011014
GO:0043625 delta DNA polymerase complex 1.56% (1/64) 10.02 0.00096 0.011014
GO:0006725 cellular aromatic compound metabolic process 7.81% (5/64) 2.66 0.001193 0.012071
GO:0032784 regulation of DNA-templated transcription, elongation 1.56% (1/64) 9.02 0.00192 0.013761
GO:0032786 positive regulation of DNA-templated transcription, elongation 1.56% (1/64) 9.02 0.00192 0.013761
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 1.56% (1/64) 9.02 0.00192 0.013761
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 1.56% (1/64) 9.02 0.00192 0.013761
GO:0045944 positive regulation of transcription by RNA polymerase II 1.56% (1/64) 9.02 0.00192 0.013761
GO:1901360 organic cyclic compound metabolic process 7.81% (5/64) 2.59 0.001492 0.014255
GO:1903508 positive regulation of nucleic acid-templated transcription 1.56% (1/64) 8.44 0.002879 0.015005
GO:1902680 positive regulation of RNA biosynthetic process 1.56% (1/64) 8.44 0.002879 0.015005
GO:0051254 positive regulation of RNA metabolic process 1.56% (1/64) 8.44 0.002879 0.015005
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity 1.56% (1/64) 8.44 0.002879 0.015005
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 1.56% (1/64) 8.44 0.002879 0.015005
GO:0045893 positive regulation of transcription, DNA-templated 1.56% (1/64) 8.44 0.002879 0.015005
GO:0034654 nucleobase-containing compound biosynthetic process 4.69% (3/64) 3.69 0.001674 0.015155
GO:0018130 heterocycle biosynthetic process 4.69% (3/64) 3.33 0.003369 0.016557
GO:0006164 purine nucleotide biosynthetic process 3.12% (2/64) 4.56 0.003296 0.016675
GO:0072522 purine-containing compound biosynthetic process 3.12% (2/64) 4.52 0.00352 0.016816
GO:0009108 coenzyme biosynthetic process 3.12% (2/64) 4.47 0.00375 0.017432
GO:0019438 aromatic compound biosynthetic process 4.69% (3/64) 3.26 0.003878 0.017551
GO:0034641 cellular nitrogen compound metabolic process 7.81% (5/64) 2.25 0.004115 0.018149
GO:0009260 ribonucleotide biosynthetic process 3.12% (2/64) 4.67 0.00287 0.018285
GO:0009152 purine ribonucleotide biosynthetic process 3.12% (2/64) 4.67 0.00287 0.018285
GO:0046390 ribose phosphate biosynthetic process 3.12% (2/64) 4.67 0.00287 0.018285
GO:1901362 organic cyclic compound biosynthetic process 4.69% (3/64) 3.01 0.006278 0.018616
GO:0010604 positive regulation of macromolecule metabolic process 1.56% (1/64) 7.44 0.005749 0.018658
GO:0031328 positive regulation of cellular biosynthetic process 1.56% (1/64) 7.44 0.005749 0.018658
GO:0031325 positive regulation of cellular metabolic process 1.56% (1/64) 7.44 0.005749 0.018658
GO:0010628 positive regulation of gene expression 1.56% (1/64) 7.44 0.005749 0.018658
GO:0051173 positive regulation of nitrogen compound metabolic process 1.56% (1/64) 7.44 0.005749 0.018658
GO:0009891 positive regulation of biosynthetic process 1.56% (1/64) 7.44 0.005749 0.018658
GO:0009893 positive regulation of metabolic process 1.56% (1/64) 7.44 0.005749 0.018658
GO:0010557 positive regulation of macromolecule biosynthetic process 1.56% (1/64) 7.44 0.005749 0.018658
GO:0072521 purine-containing compound metabolic process 3.12% (2/64) 4.09 0.006224 0.018781
GO:0006732 coenzyme metabolic process 3.12% (2/64) 4.11 0.006126 0.018815
GO:0019693 ribose phosphate metabolic process 3.12% (2/64) 4.12 0.006028 0.018852
GO:0006163 purine nucleotide metabolic process 3.12% (2/64) 4.13 0.005931 0.018892
GO:1901293 nucleoside phosphate biosynthetic process 3.12% (2/64) 4.32 0.004567 0.019158
GO:0009165 nucleotide biosynthetic process 3.12% (2/64) 4.32 0.004567 0.019158
GO:1901137 carbohydrate derivative biosynthetic process 3.12% (2/64) 4.27 0.004914 0.020126
GO:0009150 purine ribonucleotide metabolic process 3.12% (2/64) 4.2 0.005366 0.020509
GO:0009259 ribonucleotide metabolic process 3.12% (2/64) 4.2 0.005366 0.020509
GO:0003690 double-stranded DNA binding 3.12% (2/64) 3.99 0.007141 0.020816
GO:0051188 cofactor biosynthetic process 3.12% (2/64) 4.22 0.005274 0.021096
GO:0009117 nucleotide metabolic process 3.12% (2/64) 3.87 0.008338 0.023904
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds 1.56% (1/64) 6.85 0.008612 0.024283
GO:0006753 nucleoside phosphate metabolic process 3.12% (2/64) 3.82 0.008911 0.02472
GO:0090407 organophosphate biosynthetic process 3.12% (2/64) 3.8 0.009262 0.025288
GO:0051186 cofactor metabolic process 3.12% (2/64) 3.68 0.01073 0.027962
GO:0006259 DNA metabolic process 3.12% (2/64) 3.69 0.010604 0.028059
GO:0048522 positive regulation of cellular process 1.56% (1/64) 6.56 0.010516 0.028261
GO:0055086 nucleobase-containing small molecule metabolic process 3.12% (2/64) 3.63 0.011499 0.028665
GO:0006284 base-excision repair 1.56% (1/64) 6.44 0.011466 0.029003
GO:0061695 transferase complex, transferring phosphorus-containing groups 1.56% (1/64) 6.44 0.011466 0.029003
GO:0006367 transcription initiation from RNA polymerase II promoter 1.56% (1/64) 6.32 0.012416 0.030508
GO:0006357 regulation of transcription by RNA polymerase II 1.56% (1/64) 6.22 0.013365 0.031489
GO:0044454 nuclear chromosome part 1.56% (1/64) 6.22 0.013365 0.031489
GO:0003677 DNA binding 6.25% (4/64) 2.13 0.013325 0.03228
GO:0003684 damaged DNA binding 1.56% (1/64) 6.12 0.014313 0.032823
GO:0090304 nucleic acid metabolic process 4.69% (3/64) 2.57 0.014277 0.033184
GO:0044249 cellular biosynthetic process 6.25% (4/64) 2.04 0.016426 0.037175
GO:0048518 positive regulation of biological process 1.56% (1/64) 5.85 0.017151 0.038311
GO:0005634 nucleus 3.12% (2/64) 3.32 0.017376 0.038316
GO:0019637 organophosphate metabolic process 3.12% (2/64) 3.26 0.018643 0.04059
GO:1901135 carbohydrate derivative metabolic process 3.12% (2/64) 3.22 0.019783 0.042009
GO:0044271 cellular nitrogen compound biosynthetic process 4.69% (3/64) 2.4 0.019568 0.042071
GO:1901576 organic substance biosynthetic process 6.25% (4/64) 1.94 0.020495 0.04299
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_23 0.05 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_213 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_78 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_132 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_29 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.03 Archaeplastida Compare
Zea mays HCCA Cluster_258 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_283 0.027 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_61 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_87 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_109 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_146 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_158 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_241 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_267 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_288 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_277 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_485 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_49 0.047 Archaeplastida Compare
Oryza sativa HCCA Cluster_174 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_297 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_350 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_8 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_118 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.019 Archaeplastida Compare
Sequences (64) (download table)

InterPro Domains

GO Terms

Family Terms