Coexpression cluster: Cluster_341 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0097526 spliceosomal tri-snRNP complex 3.17% (2/63) 8.8 7e-06 0.000546
GO:0046540 U4/U6 x U5 tri-snRNP complex 3.17% (2/63) 8.8 7e-06 0.000546
GO:0030532 small nuclear ribonucleoprotein complex 3.17% (2/63) 7.8 3.3e-05 0.001089
GO:0097525 spliceosomal snRNP complex 3.17% (2/63) 7.8 3.3e-05 0.001089
GO:0120114 Sm-like protein family complex 3.17% (2/63) 7.8 3.3e-05 0.001089
GO:0000375 RNA splicing, via transesterification reactions 3.17% (2/63) 6.69 0.000169 0.003514
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.17% (2/63) 6.69 0.000169 0.003514
GO:0000398 mRNA splicing, via spliceosome 3.17% (2/63) 6.69 0.000169 0.003514
GO:0008380 RNA splicing 3.17% (2/63) 5.93 0.000497 0.007504
GO:0044428 nuclear part 4.76% (3/63) 4.3 0.00049 0.00814
GO:0051603 proteolysis involved in cellular protein catabolic process 4.76% (3/63) 4.34 0.000449 0.008288
GO:0044422 organelle part 6.35% (4/63) 2.99 0.001662 0.011994
GO:0044446 intracellular organelle part 6.35% (4/63) 2.99 0.001662 0.011994
GO:0006397 mRNA processing 3.17% (2/63) 5.1 0.001569 0.012405
GO:0016192 vesicle-mediated transport 4.76% (3/63) 3.72 0.001554 0.012899
GO:1905037 autophagosome organization 1.59% (1/63) 9.39 0.001493 0.013047
GO:0000045 autophagosome assembly 1.59% (1/63) 9.39 0.001493 0.013047
GO:0007033 vacuole organization 1.59% (1/63) 9.39 0.001493 0.013047
GO:0000228 nuclear chromosome 1.59% (1/63) 9.39 0.001493 0.013047
GO:0072546 ER membrane protein complex 1.59% (1/63) 9.39 0.001493 0.013047
GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity 1.59% (1/63) 9.39 0.001493 0.013047
GO:0019107 myristoyltransferase activity 1.59% (1/63) 9.39 0.001493 0.013047
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity 1.59% (1/63) 9.39 0.001493 0.013047
GO:0090304 nucleic acid metabolic process 7.94% (5/63) 2.5 0.001896 0.013114
GO:0044424 intracellular part 11.11% (7/63) 1.97 0.00198 0.01315
GO:0016071 mRNA metabolic process 3.17% (2/63) 4.83 0.002272 0.014504
GO:0044464 cell part 11.11% (7/63) 1.92 0.00247 0.015188
GO:0016070 RNA metabolic process 6.35% (4/63) 2.8 0.002661 0.015778
GO:0098657 import into cell 1.59% (1/63) 8.39 0.002984 0.016514
GO:0006897 endocytosis 1.59% (1/63) 8.39 0.002984 0.016514
GO:0022607 cellular component assembly 3.17% (2/63) 4.22 0.005244 0.028083
GO:0010498 proteasomal protein catabolic process 1.59% (1/63) 7.39 0.00596 0.028267
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 1.59% (1/63) 7.39 0.00596 0.028267
GO:0004619 phosphoglycerate mutase activity 1.59% (1/63) 7.39 0.00596 0.028267
GO:0006139 nucleobase-containing compound metabolic process 7.94% (5/63) 2.15 0.005476 0.028405
GO:0046483 heterocycle metabolic process 7.94% (5/63) 2.02 0.007881 0.033545
GO:0006511 ubiquitin-dependent protein catabolic process 3.17% (2/63) 3.93 0.007735 0.033789
GO:0019941 modification-dependent protein catabolic process 3.17% (2/63) 3.93 0.007735 0.033789
GO:0043632 modification-dependent macromolecule catabolic process 3.17% (2/63) 3.93 0.007735 0.033789
GO:1901360 organic cyclic compound metabolic process 7.94% (5/63) 1.97 0.009022 0.034039
GO:0006725 cellular aromatic compound metabolic process 7.94% (5/63) 2.0 0.008276 0.034347
GO:0030163 protein catabolic process 1.59% (1/63) 6.8 0.008927 0.034462
GO:0006338 chromatin remodeling 1.59% (1/63) 6.8 0.008927 0.034462
GO:0016043 cellular component organization 4.76% (3/63) 2.82 0.008901 0.036039
GO:0044265 cellular macromolecule catabolic process 3.17% (2/63) 3.74 0.009888 0.036476
GO:0070925 organelle assembly 1.59% (1/63) 6.39 0.011885 0.041102
GO:0043248 proteasome assembly 1.59% (1/63) 6.39 0.011885 0.041102
GO:0016742 hydroxymethyl-, formyl- and related transferase activity 1.59% (1/63) 6.39 0.011885 0.041102
GO:0071840 cellular component organization or biogenesis 4.76% (3/63) 2.65 0.012276 0.041587
GO:0003697 single-stranded DNA binding 1.59% (1/63) 6.07 0.014834 0.048285
GO:0016868 intramolecular transferase activity, phosphotransferases 1.59% (1/63) 6.07 0.014834 0.048285
GO:0005694 chromosome 1.59% (1/63) 5.93 0.016306 0.048335
GO:0003684 damaged DNA binding 1.59% (1/63) 5.93 0.016306 0.048335
GO:0006289 nucleotide-excision repair 1.59% (1/63) 5.93 0.016306 0.048335
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_123 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_131 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_168 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_208 0.028 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_217 0.038 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_254 0.028 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_50 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_89 0.025 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_120 0.024 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_210 0.026 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_265 0.025 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_267 0.027 Archaeplastida Compare
Gingko biloba HCCA Cluster_338 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_1 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_69 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_106 0.032 Archaeplastida Compare
Zea mays HCCA Cluster_131 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_166 0.06 Archaeplastida Compare
Zea mays HCCA Cluster_176 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_186 0.038 Archaeplastida Compare
Zea mays HCCA Cluster_201 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_279 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_296 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_340 0.038 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_77 0.035 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_128 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_142 0.036 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_155 0.028 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_2 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_78 0.036 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_109 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_177 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_185 0.034 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_222 0.037 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_261 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_270 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_25 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_181 0.04 Archaeplastida Compare
Picea abies HCCA Cluster_199 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_203 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_211 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_273 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_375 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_488 0.034 Archaeplastida Compare
Picea abies HCCA Cluster_530 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_12 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_92 0.022 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_134 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_123 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_144 0.033 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_200 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_222 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_249 0.035 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_252 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_274 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_68 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_105 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_146 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_168 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_227 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_50 0.047 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_121 0.022 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_149 0.038 Archaeplastida Compare
Sequences (63) (download table)

InterPro Domains

GO Terms

Family Terms