Coexpression cluster: Cluster_3 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016491 oxidoreductase activity 19.05% (12/63) 3.81 0.0 0.0
GO:0009055 electron transfer activity 7.94% (5/63) 6.24 0.0 1e-06
GO:0051536 iron-sulfur cluster binding 7.94% (5/63) 5.35 0.0 8e-06
GO:0051540 metal cluster binding 7.94% (5/63) 5.35 0.0 8e-06
GO:0048037 cofactor binding 11.11% (7/63) 3.74 1e-06 4.3e-05
GO:0015930 glutamate synthase activity 3.17% (2/63) 8.62 6e-06 0.000163
GO:0043650 dicarboxylic acid biosynthetic process 3.17% (2/63) 8.62 6e-06 0.000163
GO:0006537 glutamate biosynthetic process 3.17% (2/63) 8.62 6e-06 0.000163
GO:0006536 glutamate metabolic process 3.17% (2/63) 8.62 6e-06 0.000163
GO:0055114 oxidation-reduction process 11.11% (7/63) 3.1 1.7e-05 0.000382
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors 3.17% (2/63) 8.03 1.9e-05 0.000399
GO:0009084 glutamine family amino acid biosynthetic process 3.17% (2/63) 7.62 3.8e-05 0.000731
GO:0009064 glutamine family amino acid metabolic process 3.17% (2/63) 7.29 6.4e-05 0.001042
GO:0043648 dicarboxylic acid metabolic process 3.17% (2/63) 7.29 6.4e-05 0.001042
GO:0016651 oxidoreductase activity, acting on NAD(P)H 3.17% (2/63) 6.81 0.000133 0.002036
GO:0008150 biological_process 30.16% (19/63) 1.21 0.000283 0.004056
GO:0003824 catalytic activity 25.4% (16/63) 1.34 0.000382 0.005141
GO:1901135 carbohydrate derivative metabolic process 4.76% (3/63) 3.72 0.001536 0.019538
GO:0008152 metabolic process 20.63% (13/63) 1.3 0.001953 0.023537
GO:0044036 cell wall macromolecule metabolic process 1.59% (1/63) 8.62 0.00255 0.025393
GO:0003796 lysozyme activity 1.59% (1/63) 8.62 0.00255 0.025393
GO:0016998 cell wall macromolecule catabolic process 1.59% (1/63) 8.62 0.00255 0.025393
GO:1901607 alpha-amino acid biosynthetic process 3.17% (2/63) 4.81 0.002319 0.026547
GO:0050992 dimethylallyl diphosphate biosynthetic process 1.59% (1/63) 7.62 0.005094 0.029913
GO:0046490 isopentenyl diphosphate metabolic process 1.59% (1/63) 7.62 0.005094 0.029913
GO:0050993 dimethylallyl diphosphate metabolic process 1.59% (1/63) 7.62 0.005094 0.029913
GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity 1.59% (1/63) 7.62 0.005094 0.029913
GO:0006026 aminoglycan catabolic process 1.59% (1/63) 7.62 0.005094 0.029913
GO:0006027 glycosaminoglycan catabolic process 1.59% (1/63) 7.62 0.005094 0.029913
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 1.59% (1/63) 7.62 0.005094 0.029913
GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor 1.59% (1/63) 7.62 0.005094 0.029913
GO:0009240 isopentenyl diphosphate biosynthetic process 1.59% (1/63) 7.62 0.005094 0.029913
GO:0009253 peptidoglycan catabolic process 1.59% (1/63) 7.62 0.005094 0.029913
GO:0061783 peptidoglycan muralytic activity 1.59% (1/63) 7.62 0.005094 0.029913
GO:1901605 alpha-amino acid metabolic process 3.17% (2/63) 4.53 0.003407 0.032511
GO:0008652 cellular amino acid biosynthetic process 3.17% (2/63) 4.49 0.003608 0.033048
GO:0019752 carboxylic acid metabolic process 4.76% (3/63) 3.18 0.004493 0.039571
GO:0043436 oxoacid metabolic process 4.76% (3/63) 3.14 0.004788 0.040606
GO:0000270 peptidoglycan metabolic process 1.59% (1/63) 7.03 0.007632 0.040645
GO:0051539 4 iron, 4 sulfur cluster binding 1.59% (1/63) 7.03 0.007632 0.040645
GO:0030203 glycosaminoglycan metabolic process 1.59% (1/63) 7.03 0.007632 0.040645
GO:0006022 aminoglycan metabolic process 1.59% (1/63) 7.03 0.007632 0.040645
GO:0006082 organic acid metabolic process 4.76% (3/63) 3.12 0.004991 0.040816
GO:0003674 molecular_function 34.92% (22/63) 0.73 0.007891 0.04107
GO:0044281 small molecule metabolic process 6.35% (4/63) 2.24 0.010248 0.046016
GO:0022900 electron transport chain 1.59% (1/63) 6.62 0.010163 0.046548
GO:0008565 protein transporter activity 1.59% (1/63) 6.62 0.010163 0.046548
GO:1901136 carbohydrate derivative catabolic process 1.59% (1/63) 6.62 0.010163 0.046548
GO:0006081 cellular aldehyde metabolic process 1.59% (1/63) 6.62 0.010163 0.046548
GO:0016725 oxidoreductase activity, acting on CH or CH2 groups 1.59% (1/63) 6.62 0.010163 0.046548
GO:0019682 glyceraldehyde-3-phosphate metabolic process 1.59% (1/63) 6.62 0.010163 0.046548
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_34 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_106 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_117 0.061 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_112 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_217 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_43 0.047 Archaeplastida Compare
Zea mays HCCA Cluster_155 0.046 Archaeplastida Compare
Zea mays HCCA Cluster_279 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_108 0.082 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_155 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_270 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_239 0.03 Archaeplastida Compare
Picea abies HCCA Cluster_465 0.031 Archaeplastida Compare
Oryza sativa HCCA Cluster_93 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_164 0.037 Archaeplastida Compare
Oryza sativa HCCA Cluster_175 0.03 Archaeplastida Compare
Oryza sativa HCCA Cluster_321 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_342 0.035 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_12 0.026 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_198 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_21 0.031 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_123 0.032 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_159 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_271 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_1 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_231 0.04 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_1 0.022 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_37 0.081 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_96 0.031 Archaeplastida Compare
Sequences (63) (download table)

InterPro Domains

GO Terms

Family Terms